treewide: add version to packages

Lots of packages are missing versions in their name. This adds them
where appropriate. These were found with this command:

 $ nix-env -qa -f. | grep -v '\-[0-9A-Za-z.-_+]*$' | grep -v '^hook$'

See issue #41007.

pkgs/development/libraries/physics/nlojet/default.nix

@@ -1,7 +1,7 @@
 { stdenv, fetchurl, fetchpatch }:
 
 stdenv.mkDerivation rec {
-  name = "nlojet++";
+  name = "nlojet++-${version}";
   version = "4.1.3";
 
   src = fetchurl {