Merge remote-tracking branch 'upstream/staging-next' into down-integrate-staging

pkgs/applications/misc/blender/default.nix

@@ -35,7 +35,8 @@ stdenv.mkDerivation rec {
 
   patches = lib.optional stdenv.isDarwin ./darwin.patch;
 
-  nativeBuildInputs = [ cmake makeWrapper ] ++ optional cudaSupport addOpenGLRunpath;
+  nativeBuildInputs = [ cmake makeWrapper python3Packages.wrapPython ]
+    ++ optionals cudaSupport [ addOpenGLRunpath ];
   buildInputs =
     [ boost ffmpeg gettext glew ilmbase
       freetype libjpeg libpng libsamplerate libsndfile libtiff
@@ -63,6 +64,7 @@ stdenv.mkDerivation rec {
     ++ optional cudaSupport cudatoolkit
     ++ optional colladaSupport opencollada
     ++ optional spaceNavSupport libspnav;
+  pythonPath = with python3Packages; [ numpy requests ];
 
   postPatch = ''
     # allow usage of dynamically linked embree
@@ -109,6 +111,7 @@ stdenv.mkDerivation rec {
       "-DWITH_PYTHON_INSTALL_NUMPY=OFF"
       "-DPYTHON_NUMPY_PATH=${python3Packages.numpy}/${python.sitePackages}"
       "-DPYTHON_NUMPY_INCLUDE_DIRS=${python3Packages.numpy}/${python.sitePackages}/numpy/core/include"
+      "-DWITH_PYTHON_INSTALL_REQUESTS=OFF"
       "-DWITH_OPENVDB=ON"
       "-DWITH_TBB=ON"
       "-DWITH_IMAGE_OPENJPEG=ON"
@@ -137,10 +140,11 @@ stdenv.mkDerivation rec {
 
   blenderExecutable =
     placeholder "out" + (if stdenv.isDarwin then "/Blender.app/Contents/MacOS/Blender" else "/bin/blender");
-  # --python-expr is used to workaround https://developer.blender.org/T74304
   postInstall = ''
+    buildPythonPath "$pythonPath"
     wrapProgram $blenderExecutable \
-      --prefix PYTHONPATH : ${python3Packages.numpy}/${python.sitePackages} \
+      --prefix PATH : $program_PATH \
+      --prefix PYTHONPATH : "$program_PYTHONPATH" \
       --add-flags '--python-use-system-env'
   '';
 

pkgs/applications/misc/dasel/default.nix

@@ -5,13 +5,13 @@
 
 buildGoModule rec {
   pname = "dasel";
-  version = "1.13.6";
+  version = "1.14.0";
 
   src = fetchFromGitHub {
     owner = "TomWright";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-PTi1blbMVsuftLrFIYNDI8ZFEwRxDA53Md9oZTv7nHs=";
+    sha256 = "1g4a001k86myfln0xlzy8w9krwamvfchnvywpr1p3x6iw95z46w8";
   };
 
   vendorSha256 = "sha256-BdX4DO77mIf/+aBdkNVFUzClsIml1UMcgvikDbbdgcY=";

pkgs/applications/misc/foxitreader/default.nix

@@ -0,0 +1,79 @@
+{ mkDerivation, lib, fetchzip, libarchive, autoPatchelfHook, libsecret, libGL, zlib, openssl, qtbase, qtwebkit, qtxmlpatterns }:
+
+mkDerivation rec {
+  pname = "foxitreader";
+  version = "2.4.4.0911";
+
+  src = fetchzip {
+    url = "https://cdn01.foxitsoftware.com/pub/foxit/reader/desktop/linux/${lib.versions.major version}.x/${lib.versions.majorMinor version}/en_us/FoxitReader.enu.setup.${version}.x64.run.tar.gz";
+    sha256 = "0ff4xs9ipc7sswq0czfhpsd7qw7niw0zsf9wgsqhbbgzcpbdhcb7";
+    stripRoot = false;
+  };
+
+  buildInputs = [ libGL libsecret openssl qtbase qtwebkit qtxmlpatterns zlib ];
+
+  nativeBuildInputs = [ autoPatchelfHook libarchive ];
+
+  buildPhase = ''
+    runHook preBuild
+
+    input_file=$src/*.run
+    mkdir -p extracted
+    # Look for all 7z files and extract them
+    grep --only-matching --byte-offset --binary \
+      --text -P '7z\xBC\xAF\x27\x1C\x00\x03' $input_file | cut -d: -f1 |
+      while read position; do
+        tail -c +$(($position + 1)) $input_file > file.7z
+        bsdtar xf file.7z -C extracted
+      done
+
+    runHook postBuild
+  '';
+
+  installPhase = ''
+    runHook preInstall
+
+    mkdir -p $out/lib
+    cd extracted
+
+    cp -r  \
+      CollectStrategy.txt \
+      cpdf_settings \
+      fxplugins \
+      lang \
+      resource \
+      run \
+      stamps \
+      welcome \
+      Wrappers \
+      $out/lib/
+
+    patchelf $out/lib/fxplugins/librms.so \
+      --replace-needed libssl.so.10 libssl.so \
+      --replace-needed libcrypto.so.10 libcrypto.so
+
+    # FIXME: Doing this with one invocation is broken right now
+    patchelf $out/lib/fxplugins/librmscrypto.so \
+      --replace-needed libssl.so.10 libssl.so
+    patchelf $out/lib/fxplugins/librmscrypto.so \
+      --replace-needed libcrypto.so.10 libcrypto.so
+
+    install -D -m 755 FoxitReader -t $out/bin
+
+    # Install icon and desktop files
+    install -D -m 644 images/FoxitReader.png -t $out/share/pixmaps/
+    install -D -m 644 FoxitReader.desktop -t $out/share/applications/
+    echo Exec=FoxitReader %F >> $out/share/applications/FoxitReader.desktop
+
+    runHook postInstall
+  '';
+
+  qtWrapperArgs = [ "--set appname FoxitReader" "--set selfpath $out/lib" ];
+
+  meta = with lib; {
+    description = "A viewer for PDF documents";
+    homepage = "https://www.foxitsoftware.com/";
+    license = licenses.unfree;
+    maintainers = with maintainers; [ p-h rhoriguchi ];
+  };
+}

pkgs/applications/misc/megasync/default.nix

@@ -1,4 +1,5 @@
-{ lib, stdenv
+{ lib
+, stdenv
 , autoconf
 , automake
 , c-ares
@@ -24,21 +25,29 @@
 , unzip
 , wget
 }:
-
 mkDerivation rec {
   pname = "megasync";
-  version = "4.3.5.0";
+  version = "4.4.0.0";
 
   src = fetchFromGitHub {
     owner = "meganz";
     repo = "MEGAsync";
     rev = "v${version}_Linux";
-    sha256 = "0rr1jjy0n5bj1lh6xi3nbbcikvq69j3r9qnajp4mhywr5izpccvs";
+    sha256 = "1xggca7283943070mmpsfhh7c9avy809h0kgmf7497f4ca5zkg2y";
     fetchSubmodules = true;
   };
 
-  nativeBuildInputs =
-    [ autoconf automake doxygen lsb-release pkg-config qttools swig unzip ];
+  nativeBuildInputs = [
+    autoconf
+    automake
+    doxygen
+    libtool
+    lsb-release
+    pkg-config
+    qttools
+    swig
+    unzip
+  ];
   buildInputs = [
     c-ares
     cryptopp
@@ -47,7 +56,6 @@ mkDerivation rec {
     libmediainfo
     libraw
     libsodium
-    libtool
     libuv
     libzen
     qtbase
@@ -65,7 +73,7 @@ mkDerivation rec {
   ];
 
   postPatch = ''
-    for file in $(find src/ -type f \( -iname configure -o -iname \*.sh  \) ); do
+    for file in $(find src/ -type f \( -iname configure -o -iname \*.sh \) ); do
       substituteInPlace "$file" --replace "/bin/bash" "${stdenv.shell}"
     done
   '';

pkgs/applications/misc/obsidian/default.nix

@@ -30,12 +30,12 @@ let
 
 in stdenv.mkDerivation rec {
   pname = "obsidian";
-  version = "0.11.9";
+  version = "0.11.13";
 
   src = fetchurl {
     url =
       "https://github.com/obsidianmd/obsidian-releases/releases/download/v${version}/obsidian-${version}.tar.gz";
-    sha256 = "XymM3qma8H2dm2tq8Zg+oKxOzb48azqlqn701pN5gdI=";
+    sha256 = "0QL1rP37pmdIdGM9eHa7PfW1GVrvn2fX4bQPqQ8FOpI=";
   };
 
   nativeBuildInputs = [ makeWrapper graphicsmagick ];

pkgs/applications/misc/pdfarranger/default.nix

@@ -5,13 +5,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "pdfarranger";
-  version = "1.7.0";
+  version = "1.7.1";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = version;
-    sha256 = "0dmgmvpghsm938iznalbg8h8k17a5h3q466yfc67mcll428n4nx3";
+    sha256 = "1c2mafnz8pv32wzkc2wx4q8y2x7xffpn6ag12dj7ga5n772fb6s3";
   };
 
   nativeBuildInputs = [

pkgs/applications/misc/pytrainer/default.nix

@@ -1,81 +1,77 @@
 { lib
-, fetchFromGitHub
-, perl
 , python3
-, sqlite
-, gpsbabel
+, fetchFromGitHub
+, gdk-pixbuf
 , gnome3
-, gobject-introspection
-, wrapGAppsHook
-, gtk3
-, xvfb_run
-, webkitgtk
+, gpsbabel
 , glib-networking
 , glibcLocales
+, gobject-introspection
+, gtk3
+, perl
+, sqlite
 , tzdata
-, substituteAll
+, webkitgtk
+, wrapGAppsHook
+, xvfb_run
 }:
 
 let
-  # Pytrainer needs a matplotlib with GTK backend.
-  matplotlibGtk = python3.pkgs.matplotlib.override {
-    enableGtk3 = true;
+  python = python3.override {
+    packageOverrides = (self: super: {
+      matplotlib = super.matplotlib.override {
+        enableGtk3 = true;
+      };
+    });
   };
-
-in
-
-python3.pkgs.buildPythonApplication rec {
+in python.pkgs.buildPythonApplication rec {
   pname = "pytrainer";
-  version = "2.0.1";
+  version = "2.0.2";
 
   src = fetchFromGitHub {
     owner = "pytrainer";
     repo = "pytrainer";
     rev = "v${version}";
-    sha256 = "0m2sy3f5pyc4wv1ns31r7vlafqkzp0a2jasaskwrkl6273agbbk9";
+    sha256 = "sha256-i3QC6ct7tS8B0QQjtVqPcd03LLIxo6djQe4YX35syzk=";
   };
 
-  patches = [
-    (substituteAll {
-      src = ./fix-paths.patch;
-      perl = "${perl}/bin/perl";
-    })
-  ];
-
-  postPatch = ''
-    substituteInPlace ./setup.py \
-      --replace "'mysqlclient'," ""
-  '';
-
-  propagatedBuildInputs = with python3.pkgs; [
-    dateutil
-    lxml
-    matplotlibGtk
-    pygobject3
-    sqlalchemy
+  propagatedBuildInputs = with python.pkgs; [
     sqlalchemy_migrate
-    psycopg2
-    requests
-    certifi
+    python-dateutil
+    matplotlib
+    lxml
     setuptools
+    requests
+    gdal
   ];
 
   nativeBuildInputs = [
     gobject-introspection
     wrapGAppsHook
-    xvfb_run
   ];
 
   buildInputs = [
-    gpsbabel
     sqlite
     gtk3
     webkitgtk
     glib-networking
-    glibcLocales
     gnome3.adwaita-icon-theme
+    gdk-pixbuf
   ];
 
+  makeWrapperArgs = [
+    "--prefix" "PATH" ":" (lib.makeBinPath [ perl gpsbabel ])
+  ];
+
+  checkInputs = [
+    glibcLocales
+    perl
+    xvfb_run
+  ] ++ (with python.pkgs; [
+    mysqlclient
+    psycopg2
+  ]);
+
   checkPhase = ''
     env HOME=$TEMPDIR TZDIR=${tzdata}/share/zoneinfo \
       TZ=Europe/Kaliningrad \
@@ -85,9 +81,9 @@ python3.pkgs.buildPythonApplication rec {
   '';
 
   meta = with lib; {
-    homepage = "https://github.com/pytrainer/pytrainer/wiki";
+    homepage = "https://github.com/pytrainer/pytrainer";
     description = "Application for logging and graphing sporting excursions";
-    maintainers = [ maintainers.rycee ];
+    maintainers = with maintainers; [ rycee dotlambda ];
     license = licenses.gpl2Plus;
     platforms = platforms.linux;
   };

pkgs/applications/misc/pytrainer/fix-paths.patch

@@ -1,11 +0,0 @@
---- a/imports/file_garminfit.py
-+++ b/imports/file_garminfit.py
-@@ -81,7 +81,7 @@
-         logging.debug(">>")
-         result = False
-         try:
--            result = subprocess.check_output(["perl",
-+            result = subprocess.check_output(["@perl@",
-                                               self.main_data_path+"plugins/garmin-fit/bin/fit2tcx",
-                                               filename])
-         except subprocess.CalledProcessError:

pkgs/applications/misc/qdirstat/default.nix

@@ -4,13 +4,13 @@
 
 let
   pname = "qdirstat";
-  version = "1.7";
+  version = "1.7.1";
 
   src = fetchFromGitHub {
     owner = "shundhammer";
     repo = pname;
     rev = version;
-    sha256 = "163x3fxra0l3vvrzm25mh7jvcwjbmwsqlpppkxx76mkz9a1769fy";
+    sha256 = "sha256-i1xHMwSnBULJbOA/ykQK9WBd+6TBNBRI9hnU1FDGQlY=";
   };
 in
 
@@ -50,7 +50,7 @@ mkDerivation {
   meta = with lib; {
     description = "Graphical disk usage analyzer";
     homepage = src.meta.homepage;
-    license = licenses.gpl2;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ gnidorah ];
     platforms = platforms.linux;
   };

pkgs/applications/misc/qlcplus/default.nix

@@ -29,6 +29,8 @@ mkDerivation rec {
 
   qmakeFlags = [ "INSTALLROOT=$(out)" ];
 
+  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
+
   postPatch = ''
     patchShebangs .
     sed -i -e '/unix:!macx:INSTALLROOT += \/usr/d' \

pkgs/applications/misc/udiskie/default.nix

@@ -19,13 +19,13 @@
 
 buildPythonApplication rec {
   pname = "udiskie";
-  version = "2.3.2";
+  version = "2.3.3";
 
   src = fetchFromGitHub {
     owner = "coldfix";
     repo = "udiskie";
     rev = "v${version}";
-    hash = "sha256-eucAFMzLf2RfMfVgFTfPAgVNpDADddvTUZQO/XbBhGo=";
+    hash = "sha256-OeNAcL7jd8GiPVUGxWwX4N/G/jzxfyifaoSD/hXXwyM=";
   };
 
   nativeBuildInputs = [
@@ -58,8 +58,8 @@ buildPythonApplication rec {
   '';
 
   checkInputs = [
-    nose
     keyutils
+    nose
   ];
 
   checkPhase = ''