Merge pull request #43972 from NixOS/python-unstable

Python packages: major updates

pkgs/applications/misc/rtv/default.nix

@@ -1,9 +1,9 @@
-{ stdenv, fetchFromGitHub, pythonPackages }:
+{ stdenv, fetchFromGitHub, python3Packages }:
 
-with pythonPackages;
+with python3Packages;
 buildPythonApplication rec {
   version = "1.23.0";
-  name = "rtv-${version}";
+  pname = "rtv";
 
   src = fetchFromGitHub {
     owner = "michael-lazar";
@@ -19,7 +19,7 @@ buildPythonApplication rec {
     py.test
   '';
 
-  buildInputs = [
+  checkInputs = [
     coverage
     coveralls
     docopt
@@ -30,18 +30,11 @@ buildPythonApplication rec {
   ];
 
   propagatedBuildInputs = [
-    backports_functools_lru_cache
     beautifulsoup4
-    configparser
-    contextlib2
     decorator
     kitchen
-    mailcap-fix
-    mccabe
     requests
     six
-    tornado
-    pyyaml
   ];
 
   meta = with stdenv.lib; {

pkgs/applications/science/spyder/default.nix

@@ -1,18 +1,10 @@
-{ stdenv, fetchPypi, buildPythonApplication, makeDesktopItem
+{ stdenv, python3, makeDesktopItem }:
-# mandatory
-, numpydoc, qtconsole, qtawesome, jedi, pycodestyle, psutil
-, pyflakes, rope, nbconvert, mccabe, pyopengl, cloudpickle
-# optional
-, numpy ? null, scipy ? null, matplotlib ? null
-# optional
-, pylint ? null
-}:
 
-buildPythonApplication rec {
+python3.pkgs.buildPythonApplication rec {
   pname = "spyder";
   version = "3.2.8";
 
-  src = fetchPypi {
+  src = python3.pkgs.fetchPypi {
     inherit pname version;
     sha256 = "0iwcby2bxvayz0kp282yh864br55w6gpd8rqcdj1cp3jbn3q6vg5";
   };
@@ -22,7 +14,7 @@ buildPythonApplication rec {
     sed -i -e '/pyqt5/d' setup.py
   '';
 
-  propagatedBuildInputs = [
+  propagatedBuildInputs = with python3.pkgs; [
     jedi pycodestyle psutil pyflakes rope numpy scipy matplotlib pylint
     numpydoc qtconsole qtawesome nbconvert mccabe pyopengl cloudpickle
   ];

pkgs/development/python-modules/Flask-PyMongo/default.nix

@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "Flask-PyMongo";
-  version = "0.5.2";
+  version = "2.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "aab5ddab8f443e8a011e024f618bb89e078bdcc2274597079469fdf5ddc032b5";
+    sha256 = "6a02add52ac245064720c2bb8b02074b9a5a0d9498279510ea2a537512fd3fa5";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/GitPython/default.nix

@@ -1,12 +1,12 @@
 { lib, buildPythonPackage, fetchPypi, git, gitdb2, mock, nose, ddt }:
 
 buildPythonPackage rec {
-  version = "2.1.9";
+  version = "2.1.11";
   pname = "GitPython";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a9in1jfv9ssxhckl6sasw45bhm762y2r5ikgb2pk2g8yqdc6z64";
+    sha256 = "8237dc5bfd6f1366abeee5624111b9d6879393d84745a507de0fda86043b65a8";
   };
 
   checkInputs = [ mock nose ddt ];

pkgs/development/python-modules/JPype1/default.nix

@@ -1,4 +1,4 @@
-{ buildPythonPackage, fetchPypi, isPy3k }:
+{ buildPythonPackage, fetchPypi, isPy3k, pytest }:
 
 buildPythonPackage rec {
   pname = "JPype1";
@@ -11,8 +11,10 @@ buildPythonPackage rec {
 
   patches = [ ./set-compiler-language.patch ];
 
-  # Test loader complains about non-test module on python3.
+  checkInputs = [ pytest ];
-  doCheck = !isPy3k;
+
+  # ImportError: Failed to import test module: test.testlucene
+  doCheck = false;
 
   meta = {
     homepage = "https://github.com/originell/jpype/";

pkgs/development/python-modules/WSME/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "WSME";
-  version = "0.9.2";
+  version = "0.9.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e790ac755a7e36eaa796d3966d3878677896dbc7d1c2685cb85c06b744c21976";
+    sha256 = "e24fcff24392a0b176e560ffc6591b1f658342bbc992f84e0e8a3c53fd92580a";
   };
 
   postPatch = ''

pkgs/development/python-modules/adal/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "adal";
-  version = "1.0.1";
+  version = "1.0.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "71b0e9b479320f76af4bcd268f7359580ba2e217228e83ff7529f51a9845f393";
+    sha256 = "4c020807b3f3cfd90f59203077dd5e1f59671833f8c3c5028ec029ed5072f9ce";
   };
 
   propagatedBuildInputs =  [ requests pyjwt dateutil ];

pkgs/development/python-modules/aioconsole/default.nix

@@ -10,11 +10,11 @@
 # wrapped to be able to find aioconsole and any other packages.
 buildPythonPackage rec {
   pname = "aioconsole";
-  version = "0.1.8";
+  version = "0.1.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5d2c60c0cbf87c663ef3a0b394980ff86f56ebd3c47cc87df6c410e774216c50";
+    sha256 = "3fab07073648d70d8345e0eb745bd81fcd02b5e2b080c4663faea8c8ab281c0a";
   };
 
   # hardcodes a test dependency on an old version of pytest-asyncio

pkgs/development/python-modules/alembic/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "alembic";
-  version = "0.9.10";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1cd32df9a3b8c1749082ef60ffbe05ff16617b6afadfdabc680dcb9344af33d7";
+    sha256 = "52d73b1d750f1414fa90c25a08da47b87de1e4ad883935718a8f36396e19e78e";
   };
 
   buildInputs = [ pytest pytestcov mock coverage ];

pkgs/development/python-modules/apipkg/default.nix

@@ -1,16 +1,17 @@
 { stdenv, buildPythonPackage, fetchPypi
-, pytest }:
+, pytest, setuptools_scm }:
 
 buildPythonPackage rec {
   pname = "apipkg";
-  version = "1.4";
+  version = "1.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2e38399dbe842891fe85392601aab8f40a8f4cc5a9053c326de35a1cc0297ac6";
+    sha256 = "37228cda29411948b422fae072f57e31d3396d2ee1c9783775980ee9c9990af6";
   };
 
-  buildInputs = [ pytest ];
+  buildInputs = [ setuptools_scm ];
+  checkInputs = [ pytest ];
 
   checkPhase = ''
     py.test

pkgs/development/python-modules/appnope/default.nix

@@ -0,0 +1,21 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "appnope";
+  version = "0.1.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "8b995ffe925347a2138d7ac0fe77155e4311a0ea6d6da4f5128fe4b3cbe5ed71";
+  };
+
+  meta = {
+    description = "Disable App Nap on macOS";
+    homepage    = https://pypi.python.org/pypi/appnope;
+    platforms   = lib.platforms.darwin;
+    license     = lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/arpeggio/default.nix

@@ -0,0 +1,24 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, glibcLocales
+}:
+
+buildPythonPackage rec {
+  pname = "Arpeggio";
+  version = "1.9.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "a5258b84f76661d558492fa87e42db634df143685a0e51802d59cae7daad8732";
+  };
+
+  # Shall not be needed for next release
+  LC_ALL = "en_US.UTF-8";
+  buildInputs = [ glibcLocales ];
+
+  meta = {
+    description = "Packrat parser interpreter";
+    license = lib.licenses.mit;
+  };
+}

pkgs/development/python-modules/astor/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "astor";
-  version = "0.6.2";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ff6d2e2962d834acb125cc4dcc80c54a8c17c253f4cc9d9c43b5102a560bb75d";
+    sha256 = "95c30d87a6c2cf89aa628b87398466840f0ad8652f88eb173125a6df8533fb8d";
   };
 
   # disable tests broken with python3.6: https://github.com/berkerpeksag/astor/issues/89

pkgs/development/python-modules/astroid/default.nix

@@ -1,32 +1,25 @@
-{ lib, fetchPypi, buildPythonPackage, python, logilab_common, six
+{ lib, fetchPypi, buildPythonPackage, pythonOlder, isPyPy
-, lazy-object-proxy, wrapt, singledispatch, enum34, pythonOlder
+, lazy-object-proxy, six, wrapt, typing, typed-ast
-, backports_functools_lru_cache
+, pytestrunner, pytest
 }:
 
 buildPythonPackage rec {
   pname = "astroid";
-  version = "1.6.5";
+  version = "2.0.1";
+
+  disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fc9b582dba0366e63540982c3944a9230cbc6f303641c51483fa547dcc22393a";
+    sha256 = "218e36cf8d98a42f16214e8670819ce307fa707d1dcf7f9af84c7aede1febc7f";
   };
 
-  propagatedBuildInputs = [ logilab_common six lazy-object-proxy wrapt ]
+  # From astroid/__pkginfo__.py
-    ++ lib.optionals (pythonOlder "3.4") [ enum34 singledispatch]
+  propagatedBuildInputs = [ lazy-object-proxy six wrapt ]
-    ++ lib.optionals (pythonOlder "3.3") [ backports_functools_lru_cache ];
+    ++ lib.optional (pythonOlder "3.5") typing
+    ++ lib.optional (pythonOlder "3.7" && !isPyPy) typed-ast;
 
-  postPatch = ''
+  checkInputs = [ pytestrunner pytest ];
-    cd astroid/tests
-    for i in $(ls unittest*); do mv -v $i test_$i; done
-    cd ../..
-    rm -vf astroid/tests/test_unittest_inference.py
-    rm -vf astroid/tests/test_unittest_manager.py
-  '';
-
-  checkPhase = ''
-    ${python.interpreter} -m unittest discover
-  '';
 
   meta = with lib; {
     description = "A abstract syntax tree for Python with inference support";

pkgs/development/python-modules/asyncssh/default.nix

@@ -4,12 +4,12 @@
 
 buildPythonPackage rec {
   pname = "asyncssh";
-  version = "1.13.2";
+  version = "1.13.3";
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e4c07577d021c68d4c8e6d1897987424cc25b58e0726f31ff72476a34ddb6deb";
+    sha256 = "eb5b190badc5cd2a506a1b6ced3e92f948166974eef7d1abab61acc67aa379e6";
   };
 
   propagatedBuildInputs = [ 

pkgs/development/python-modules/audiotools/default.nix

@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchurl
+, stdenv
+, darwin
+}:
+
+buildPythonPackage rec {
+  pname = "audiotools";
+  version = "3.1.1";
+
+  buildInputs = lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [
+    AudioToolbox
+    AudioUnit
+    CoreServices
+  ]);
+
+  src = fetchurl {
+    url = "https://github.com/tuffy/python-audio-tools/archive/v${version}.tar.gz";
+    sha256 = "0ymlxvqkqhzk4q088qwir3dq0zgwqlrrdfnq7f0iq97g05qshm2c";
+  };
+
+  meta = {
+    description = "Utilities and Python modules for handling audio";
+    homepage = "http://audiotools.sourceforge.net/";
+    license = lib.licenses.gpl2Plus;
+  };
+}

pkgs/development/python-modules/av/default.nix

@@ -0,0 +1,32 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, nose
+, pillow
+, numpy
+, ffmpeg_2
+, git
+, libav
+, pkgconfig
+}:
+
+buildPythonPackage rec {
+  pname = "av";
+  version = "0.4.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "bf9a8d113392c6a445f424e16f9e64ac53d1db1548731e6326763d555647c24f";
+  };
+
+  buildInputs = [ nose pillow numpy ffmpeg_2 git libav pkgconfig ];
+
+  # Because of https://github.com/mikeboers/PyAV/issues/152
+  doCheck = false;
+
+  meta = {
+    description = "Pythonic bindings for FFmpeg/Libav";
+    homepage = https://github.com/mikeboers/PyAV/;
+    license = lib.licenses.bsd2;
+  };
+}

pkgs/development/python-modules/aws-sam-translator/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "aws-sam-translator";
-  version = "1.6.0";
+  version = "1.6.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1da15d459150eb631af4f400ca336901da6a564b543fe3d7a75169ca2c9f36cb";
+    sha256 = "23160f717bd65de810fa538b7c145eae4384d10adb460e375d148de7f283bd10";
   };
 
   # Tests are not included in the PyPI package

pkgs/development/python-modules/aws-xray-sdk/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "aws-xray-sdk";
-  version = "1.1.1";
+  version = "1.1.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "13470b95a2f55036a5d7b6642250d8f3a519a6c454cd91f55778b1bb4bf5b89d";
+    sha256 = "8ec3c6c82e76c03799ec209ed59642d78f62218db6a430f7e2d20491cac3c5ef";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/backports_lzma/default.nix

@@ -9,13 +9,13 @@
 
 if !(pythonOlder "3.3") then null else buildPythonPackage rec {
   pname = "backports.lzma";
-  version = "0.0.9";
+  version = "0.0.13";
 
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9ba5d94214a79900ee297a594b8e154cd8e4a54d26eb06243c0e2f3ad5286539";
+    sha256 = "50829db66f0445442f6c796bba0ca62d1f87f54760c4682b6d1489e729a43744";
   };
 
   buildInputs = [ lzma ];

pkgs/development/python-modules/backports_unittest-mock/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "backports.unittest_mock";
-  version = "1.3";
+  version = "1.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0xdkx5wf5a2w2zd2pshk7z2cvbv6db64c1x6v9v1a18ja7bn9nf6";
+    sha256 = "73df9093bc7a2cc8e7018d08d6983dc5bcb2a47d7e7e107b9e8d0711f1702ef8";
   };
 
   propagatedBuildInputs = [ mock ];

pkgs/development/python-modules/billiard/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "billiard";
-  version = "3.5.0.3";
+  version = "3.5.0.4";
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1d7b22bdc47aa52841120fcd22a74ae4fc8c13e9d3935643098184f5788c3ce6";
+    sha256 = "ed65448da5877b5558f19d2f7f11f8355ea76b3e63e1c0a6059f47cfae5f1c84";
   };
 
   buildInputs = [ pytest case ];

pkgs/development/python-modules/biopython/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "biopython";
-  version = "1.71";
+  version = "1.72";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4f1770a29a5b18fcaca759bbc888083cdde2b301f073439ff640570d4a93e033";
+    sha256 = "ab6b492443adb90c66267b3d24d602ae69a93c68f4b9f135ba01cb06d36ce5a2";
   };
 
   propagatedBuildInputs = [ numpy ];

pkgs/development/python-modules/bootstrapped-pip/default.nix

@@ -9,20 +9,20 @@ let
   };
   setuptools_source = fetchPypi {
     pname = "setuptools";
-    version = "39.2.0";
+    version = "40.0.0";
     format = "wheel";
-    sha256 = "8fca9275c89964f13da985c3656cb00ba029d7f3916b37990927ffdf264e7926";
+    sha256 = "d68abee4eed409fbe8c302ac4d8429a1ffef912cd047a903b5701c024048dd49";
   };
 
 in stdenv.mkDerivation rec {
   pname = "pip";
-  version = "10.0.1";
+  version = "18.0";
   name = "${python.libPrefix}-bootstrapped-${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
     format = "wheel";
-    sha256 = "717cdffb2833be8409433a93746744b59505f42146e8d37de6c62b430e25d6d7";
+    sha256 = "070e4bf493c7c2c9f6a08dd797dd3c066d64074c38e9e8a0fb4e6541f266d96c";
   };
 
   unpackPhase = ''

pkgs/development/python-modules/botocore/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "botocore";
-  version = "1.10.57";
+  version = "1.10.64";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0mif7c12643hac6zxq89gv0wjf4r3vqlmm01bm68psljaj40jnpi";
+    sha256 = "977e8ab657747b3e60f4b597b9f732cbe467b12ecc52a9c5b2121c0006d41a63";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/buildout-nix/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "zc.buildout";
-  version = "2.11.5";
+  version = "2.12.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "537a22715d82362cddd811da08d11a31d30d5161ce7994b208bd85ebb348d122";
+    sha256 = "1e180b62fd129a68cb3a9ec8eb0ef457e18921269a93e87ef2cc34519415332d";
   };
 
   patches = [ ./nix.patch ];

pkgs/development/python-modules/bumps/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "bumps";
-  version = "0.7.8";
+  version = "0.7.10";
 
   propagatedBuildInputs = [six];
 
@@ -12,7 +12,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "57b71855b7659e9c8dc21722a3ed0b33efb2ead2916b22ced3b83339bcdff1a2";
+    sha256 = "07917abf7e598f2a42456ca4f704c6da2a5489eaea0b9a7c61ed8a26506737c8";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/buttersink/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "buttersink";
-  version = "0.6.8";
+  version = "0.6.9";
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "04gc63kfcqkw4qba5rijqk01xiphf04yk7hky9180ii64v2ip0j3";
+    sha256 = "c9c05982c44fbb85f17b7ef0e8bee11f375c03d89bcba50cbc2520013512107a";
   };
 
   propagatedBuildInputs = [ boto crcmod psutil ];

pkgs/development/python-modules/can/default.nix

@@ -1,21 +1,30 @@
 { lib
 , buildPythonPackage
 , fetchPypi
+, wrapt
 , pyserial
 , nose
-, mock }:
+, mock
+, pytest
+, pytest-timeout }:
 
 buildPythonPackage rec {
   pname = "python-can";
-  version = "2.1.0";
+  version = "2.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4a5c01dd67feeda35f88e6c12ea14ac8cabd426b9be0cc5f9fd083fe90a9dbfc";
+    sha256 = "b5e93b2ee32bdd597d9d908afe5171c402a04c9678ba47b60f33506738b1375b";
   };
 
-  propagatedBuildInputs = [ pyserial ];
+  propagatedBuildInputs = [ wrapt pyserial ];
-  checkInputs = [ nose mock ];
+  checkInputs = [ nose mock pytest pytest-timeout ];
+
+  checkPhase = ''
+    pytest -k "not test_writer_and_reader \
+           and not test_reader \
+           and not test_socketcan_on_ci_server"
+  '';
 
   meta = with lib; {
     homepage = https://github.com/hardbyte/python-can;

pkgs/development/python-modules/cement/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "cement";
-  version = "2.10.2";
+  version = "2.10.12";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d50c5980bf3e2456e515178ba097d16e36be0fbcab7811a60589d22f45b64f55";
+    sha256 = "58efb4eacd9ec977ce797a364a13851de6e42392bbde5287d44294f06c5a2f70";
   };
 
   # Disable test tests since they depend on a memcached server running on

pkgs/development/python-modules/chainer/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "chainer";
-  version = "4.1.0";
+  version = "4.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "49a4a691708626f742cc6fc949fce6b313e3379bd64886eb19e002b1122cc329";
+    sha256 = "a83044256edb1946c47cb9ae687d195c2aa0deaef46ab85a8ffc4a01f7001683";
   };
 
   checkInputs = [

pkgs/development/python-modules/cheroot/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "cheroot";
-  version = "6.3.2";
+  version = "6.3.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "52f915d077ce6201e59c95c4a2ef89617d9b90e6185defb40c03ff3515d2066f";
+    sha256 = "8e3ac15e1efffc81425a693e99b3c09d7ea4bf947255d8d4c38e2cf76f3a4d25";
   };
 
   propagatedBuildInputs = [ more-itertools six ];

pkgs/development/python-modules/cherrypy/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "CherryPy";
-  version = "16.0.2";
+  version = "17.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "858fbff27235a392026b1d821ad815b587815c94fbb14312e2e64cc23766b9c3";
+    sha256 = "3cdb5fbae183db49ab1f1a90643d521aa060c93f90001cc99c19d8d15b7a3fb7";
   };
 
   propagatedBuildInputs = [ cheroot portend routes six ];

pkgs/development/python-modules/click-log/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "click-log";
-  version = "0.2.1";
+  version = "0.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1r1x85023cslb2pwldd089jjk573mk3w78cnashs77wrx7yz8fj9";
+    sha256 = "16fd1ca3fc6b16c98cea63acf1ab474ea8e676849dc669d86afafb0ed7003124";
   };
 
   propagatedBuildInputs = [ click ];

pkgs/development/python-modules/cmd2/default.nix

@@ -5,11 +5,11 @@
 }:
 buildPythonPackage rec {
   pname = "cmd2";
-  version = "0.9.1";
+  version = "0.9.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wpw4f9zix30hfncm0hwxjjdx78zq26x3r8s9nvsq9vnxf41xb49";
+    sha256 = "cffc94ad46425f80dfb243f53f456b11cea3f45e683504a60b64618a6d28b417";
   };
 
   LC_ALL="en_US.UTF-8";

pkgs/development/python-modules/confluent-kafka/default.nix

@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchPypi, isPy3k, rdkafka, requests, avro3k, avro}:
 
 buildPythonPackage rec {
-  version = "0.11.4";
+  version = "0.11.5";
   pname = "confluent-kafka";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8cf480199685127c9692b0bf1e15eac82e71ae34b7967a016ab31a318741abb1";
+    sha256 = "bfb5807bfb5effd74f2cfe65e4e3e8564a9e72b25e099f655d8ad0d362a63b9f";
   };
 
   buildInputs = [ rdkafka requests ] ++ (if isPy3k then [ avro3k ] else [ avro ]) ;

pkgs/development/python-modules/consul/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "python-consul";
-  version = "1.0.1";
+  version = "1.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0feb7a14b6869bbfa9eb4868e823f040e3642b84e80c39ffdff3a8b7fd7017c4";
+    sha256 = "168f1fa53948047effe4f14d53fc1dab50192e2a2cf7855703f126f469ea11f4";
   };
 
   buildInputs = [ requests six pytest ];

pkgs/development/python-modules/cryptography/default.nix

@@ -21,7 +21,7 @@
 }:
 
 let
-  version = "2.2.2";
+  version = "2.3";
 in assert version == cryptography_vectors.version; buildPythonPackage rec {
   # also bump cryptography_vectors
   pname = "cryptography";
@@ -29,7 +29,7 @@ in assert version == cryptography_vectors.version; buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9fc295bf69130a342e7a19a39d7bbeb15c0bcaabc7382ec33ef3b2b7d18d2f63";
+    sha256 = "c132bab45d4bd0fff1d3fe294d92b0a6eb8404e93337b3127bdec9f21de117e6";
   };
 
   outputs = [ "out" "dev" ];

pkgs/development/python-modules/cryptography_vectors/default.nix

@@ -5,11 +5,11 @@
 buildPythonPackage rec {
   # also bump cryptography
   pname = "cryptography_vectors";
-  version = "2.2.2";
+  version = "2.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "28b52c84bae3a564ce51bfb0753cbe360218bd648c64efa2808c886c18505688";
+    sha256 = "356a2ded84ae379e556515eec9b68dd74957651a38465d10605bb9fbae280f15";
   };
 
   # No tests included

pkgs/development/python-modules/cupy/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "cupy";
-  version = "4.1.0";
+  version = "4.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3e714fa21401ab1d278b648543fae56fbce97e389076ebf03b4189f88c2d61e0";
+    sha256 = "ea818ff7f36cf6e5b3d3faef5af36a501c8bdeb78805820afa2999789ed698d5";
   };
 
   checkInputs = [

pkgs/development/python-modules/cx_oracle/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "cx_Oracle";
-  version = "6.3.1";
+  version = "6.4.1";
 
   buildInputs = [ odpic ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0200j6jh80rpgzxmvgcxmkshaj4zadq32g2i97nlwiq3f7q374l7";
+    sha256 = "3519bf3263c9892aaadc844735aca02d3773ed9b92f97e069cd1726882a7d1b6";
   };
 
   preConfigure = ''

pkgs/development/python-modules/dask/default.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "0.18.0";
+  version = "0.18.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ebaa0f144b43a00e7b9b3b9cb557e8ebada5fcbb982cdaba1802cd8c4c5720f0";
+    sha256 = "8fba559911788010ecedf58e540004d56d09f7829a1400dd72b74ffedafafabc";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/dbf/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
     pname = "dbf";
-    version = "0.97.7";
+    version = "0.97.11";
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "855800d12df87855096eeafc58f34c9092407e8faf197f48073e7bc2b1938de0";
+      sha256 = "8aa5a73d8b140aa3c511a3b5b204a67d391962e90c66b380dd048fcae6ddbb68";
     };
 
     propagatedBuildInputs = [ aenum ] ++ stdenv.lib.optional (pythonOlder "3.4") [ enum34 ];

pkgs/development/python-modules/deprecation/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "deprecation";
-  version = "2.0.4";
+  version = "2.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c259bfc0237f16bbe36cb32b6d81addd919b8f4bc7253738576816e82841b96";
+    sha256 = "cbe7d15006bc339709be5e02b14884ecc479639c1a3714a908de3a8ca13b5ca9";
   };
 
   propagatedBuildInputs = [ packaging ];

pkgs/development/python-modules/dill/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "dill";
-  version = "0.2.8.1";
+  version = "0.2.8.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "53a6d7bf74f737a514cb89f72d0cb8b80dbd44a9cbbffaa14bffb57f4d7c3822";
+    sha256 = "624dc244b94371bb2d6e7f40084228a2edfff02373fe20e018bef1ee92fdd5b3";
   };
 
   # Messy test suite. Even when running the tests like tox does, it fails

pkgs/development/python-modules/django-sites/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "django-sites";
-  version = "0.9";
+  version = "0.10";
 
   meta = {
     description = ''
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05nrydk4a5a99qrxjrcnacs8nbbq5pfjikdpj4w9yn5yfayp057s";
+    sha256 = "f6f9ae55a05288a95567f5844222052b6b997819e174f4bde4e7c23763be6fc3";
   };
 
   propagatedBuildInputs = [ django ];

pkgs/development/python-modules/django/2_0.nix

@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "2.0.6";
+  version = "2.0.7";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3eb25c99df1523446ec2dc1b00e25eb2ecbdf42c9d8b0b8b32a204a8db9011f8";
+    sha256 = "97886b8a13bbc33bfeba2ff133035d3eca014e2309dff2b6da0bdfc0b8656613";
   };
 
   patches = stdenv.lib.optionals withGdal [

pkgs/development/python-modules/docker/default.nix

@@ -3,12 +3,12 @@
 , ipaddress, backports_ssl_match_hostname, docker_pycreds
 }:
 buildPythonPackage rec {
-  version = "3.4.0";
+  version = "3.4.1";
   pname = "docker";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e9cc39e24905e67ba9e2df14c94488f5cf030fb72ae1c60de505ce5ea90503f7";
+    sha256 = "ad077b49660b711d20f50f344f70cfae014d635ef094bf21b0d7df5f0aeedf99";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/docker_compose/default.nix

@@ -6,12 +6,12 @@
 , enum34, functools32,
 }:
 buildPythonApplication rec {
-  version = "1.21.2";
+  version = "1.22.0";
   pname = "docker-compose";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0b0wihlyk89y6n0mly2vbljzqai1hhs6yzplskwdah2lfn9p3c38";
+    sha256 = "915cdd0ea7aff349d27a8e0585124ac38695635201770a35612837b25e234677";
   };
 
   # lots of networking and other fails

pkgs/development/python-modules/dogpile.cache/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "dogpile.cache";
-  version = "0.6.5";
+  version = "0.6.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "631197e78b4471bb0e93d0a86264c45736bc9ae43b4205d581dcc34fbe9b5f31";
+    sha256 = "044d4ea0a0abc72491044f3d3df8e1fc9e8fa7a436c6e9a0da5850d23a0d16c1";
   };
 
   # Disable concurrency tests that often fail,

pkgs/development/python-modules/dropbox/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dropbox";
-  version = "8.9.0";
+  version = "9.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e7eeac47f35e73b34023b7a3089380e74bacd0cce4b57e1e347539dfb53681d2";
+    sha256 = "385c62c2983c3804ba0064762f9e5f4753ea20a132c727b4961d3b68e1372ac8";
   };
 
   # Set DROPBOX_TOKEN environment variable to a valid token.

pkgs/development/python-modules/dulwich/default.nix

@@ -4,12 +4,12 @@
 , git, glibcLocales }:
 
 buildPythonPackage rec {
-  version = "0.19.3";
+  version = "0.19.5";
   pname = "dulwich";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0d1ab6adf5e8e9bc30cce6e2f924ca06e50241fb1bb17a585fc8d98e3c09c4a4";
+    sha256 = "34f99e575fe1f1e89cca92cec1ddd50b4991199cb00609203b28df9eb83ce259";
   };
 
   LC_ALL = "en_US.UTF-8";

pkgs/development/python-modules/face_recognition/default.nix

@@ -1,5 +1,5 @@
 { buildPythonPackage, fetchFromGitHub, pillow, click, dlib, numpy
-, face_recognition_models, stdenv, flake8, tox, pytest, glibcLocales
+, face_recognition_models, stdenv, flake8, pytest, glibcLocales
 }:
 
 buildPythonPackage rec {
@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ pillow click dlib numpy face_recognition_models ];
 
-  checkInputs = [ flake8 tox pytest glibcLocales ];
+  checkInputs = [ flake8 pytest glibcLocales ];
   checkPhase = ''
     LC_ALL="en_US.UTF-8" py.test
   '';

pkgs/development/python-modules/faker/default.nix

@@ -8,11 +8,11 @@ assert pythonOlder "3.3" -> ipaddress != null;
 
 buildPythonPackage rec {
   pname = "Faker";
-  version = "0.8.16";
+  version = "0.8.17";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "04645d946256b835c675c1cef7c03817a164b0c4e452018fd50b212ddff08c22";
+    sha256 = "0e9a1227a3a0f3297a485715e72ee6eb77081b17b629367042b586e38c03c867";
   };
 
   checkInputs = [

pkgs/development/python-modules/fiona/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "Fiona";
-  version = "1.7.12";
+  version = "1.7.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8b54eb8422d7c502bb7776b184018186bede1a489cf438a7a47f992ade6a0e51";
+    sha256 = "a156129f0904cb7eb24aa0745b6075da54f2c31db168ed3bcac8a4bd716d77b2";
   };
 
   buildInputs = [

pkgs/development/python-modules/flake8-import-order/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "flake8-import-order";
-  version = "0.17.1";
+  version = "0.18";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "68d430781a9ef15c85a0121500cf8462f1a4bc7672acb2a32bfdbcab044ae0b7";
+    sha256 = "9be5ca10d791d458eaa833dd6890ab2db37be80384707b0f76286ddd13c16cbf";
   };
 
   propagatedBuildInputs = [ pycodestyle ] ++ lib.optional (!isPy3k) enum34;

pkgs/development/python-modules/flake8/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, pythonOlder
+{ stdenv, buildPythonPackage, fetchPypi, pythonOlder, fetchpatch
 , mock, pytest, pytestrunner
 , configparser, enum34, mccabe, pycodestyle, pyflakes
 }:
@@ -12,6 +12,37 @@ buildPythonPackage rec {
     sha256 = "7253265f7abd8b313e3892944044a365e3f4ac3fcdcfb4298f55ee9ddf188ba0";
   };
 
+  # Allow newer version of pycodestyle and pyflakes
+  patches = [
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/4fcbcccf381ce0987faa297173e4008b0490918f.patch;
+      sha256 = "0lfsg9n92fc8whj29paqsx7ifap2szv7pxj13hy739y87gsps676";
+      excludes = [ "setup.cfg" ];
+    })
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/0273ca561f0ad03adff41ce5d95a1ec31b10fe5a.patch;
+      sha256 = "1ziy54v1cm7gn7a551qvrl0rs16q8zpzh303xf5gn4rxxz13qnzb";
+      excludes = [ "setup.cfg" ];
+    })
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/85c503de32f81ed9859d902cbe20eb4d2e4e8d55.patch;
+      sha256 = "0170hjaxkq5ssva9rwkcgm4whb07fnxdb0z12gzmvw5w53hkqxj4";
+    })
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/68782675b7f00c5d24c24e424efd1fbcb0705224.patch;
+      sha256 = "183lcw7aqv5yzm8pfisrfngq3fchc7h3j7254c5hy2hqq653v98s";
+    })
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/ef1d5ceefcbfacf5dfe94534c4879ca814b130f0.patch;
+      sha256 = "1j5f0l4xryfhirixwjcl1lzayjhy6vhkizkpm7w87piylim8y26y";
+    })
+    (fetchpatch {
+      url = https://gitlab.com/pycqa/flake8/commit/527af5c214ef0eccfde3dd58d7ea15e09c483bd3.patch;
+      sha256 = "1y51r78770z27d43v64lrg8zvm39ycszzhh15cx8wq8wp3b7iz5x";
+      excludes = [ "setup.cfg" ];
+    })
+  ];
+
   buildInputs = [ pytest mock pytestrunner ];
   propagatedBuildInputs = [ pyflakes pycodestyle mccabe ]
     ++ stdenv.lib.optionals (pythonOlder "3.4") [ enum34 ]

pkgs/development/python-modules/flake8/move-pytest-config-to-pytest-ini.patch

@@ -1,22 +0,0 @@
-diff -r ad8325924f04 pytest.ini
---- /dev/null	Thu Jan 01 00:00:00 1970 +0000
-+++ b/pytest.ini	Fri Sep 30 12:28:39 2016 +0200
-@@ -0,0 +1,4 @@
-+[pytest]
-+-norecursedirs = .git .* *.egg* old docs dist build
-+-addopts = -rwv
-+
-diff -r ad8325924f04 setup.cfg
---- a/setup.cfg	Fri Sep 30 09:22:39 2016 +0200
-+++ b/setup.cfg	Fri Sep 30 12:28:39 2016 +0200
-@@ -12,10 +12,6 @@
- 	pycodestyle >= 2.0.0, < 2.1.0
- 	mccabe >= 0.5.0, < 0.6.0
- 
--[pytest]
--norecursedirs = .git .* *.egg* old docs dist build
--addopts = -rw
--
- [egg_info]
- tag_build = 
- tag_date = 0

pkgs/development/python-modules/gensim/default.nix

@@ -9,10 +9,10 @@
 
 buildPythonPackage rec {
   pname = "gensim";
-  version = "3.4.0";
+  version = "3.5.0";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05844c82c7c176449218fd3fc31e55e5d8b3fae460f261b11231f4c8ef2ed5e0";
+    sha256 = "78ed9b6ac35f104542f3bee0386d71ddf9432d74c153065d2ea9f6baf10e5b49";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy

pkgs/development/python-modules/gevent/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "gevent";
-  version = "1.3.4";
+  version = "1.3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "53c4dc705886d028f5d81e698b1d1479994a421498cd6529cb9711b5e2a84f74";
+    sha256 = "7f15861f3cc92f49663ca88c4774d26d8044783a65fbc28071a2bd1c7bf36ff0";
   };
 
   buildInputs = [ libev ];

pkgs/development/python-modules/gitdb2/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "gitdb2";
-  version = "2.0.3";
+  version = "2.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "02azg62mr99b7cllyjrly77np3vw32y8nrxpa2xjapiyaga2j3mn";
+    sha256 = "bb4c85b8a58531c51373c89f92163b92f30f81369605a67cd52d1fc21246c044";
   };
 
   propagatedBuildInputs = [ smmap2 ];

pkgs/development/python-modules/goocalendar/default.nix

@@ -14,13 +14,13 @@ with stdenv.lib;
 
 buildPythonPackage rec {
   pname = "GooCalendar";
-  version = "0.3";
+  version = "0.4";
 
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1p7qbcv06xipg48sgpdlqf72ajl3n1qlypcc0giyi1a72zpyf823";
+    sha256 = "ca3950c2728916d9fb703c886f3940ac9b76739f99ec840b0e1c2c282510e1ab";
   };
   nativeBuildInputs = [ pkgconfig gobjectIntrospection ];
   propagatedBuildInputs = [

pkgs/development/python-modules/google-api-python-client/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-api-python-client";
-  version = "1.7.3";
+  version = "1.7.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e32d30563b90c4f88ff042d4d891b5e8ed1f6cdca0adab95e9c2ce2603087436";
+    sha256 = "5d5cb02c6f3112c68eed51b74891a49c0e35263380672d662f8bfe85b8114d7c";
   };
 
   # No tests included in archive

pkgs/development/python-modules/google_cloud_speech/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-speech";
-  version = "0.34.0";
+  version = "0.35.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8396646aa9de210bacb144fabd82ab5fe577b3b11708725c879b72c96009d631";
+    sha256 = "5db2d69315b3d95d067c9bffe17994b6ee9252702888cc300d76252b451638e1";
   };
 
   propagatedBuildInputs = [ google_api_core ];

pkgs/development/python-modules/greenlet/default.nix

@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "greenlet";
-  version = "0.4.13";
+  version = "0.4.14";
   disabled = isPyPy;  # builtin for pypy
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0fef83d43bf87a5196c91e73cb9772f945a4caaff91242766c5916d1dd1381e4";
+    sha256 = "f1cc268a15ade58d9a0c04569fe6613e19b8b0345b64453064e2c3c6d79051af";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/gssapi/default.nix

@@ -3,11 +3,11 @@ nose, shouldbe, gss, krb5Full, which, darwin }:
 
 buildPythonPackage rec {
   pname = "gssapi";
-  version = "1.5.0";
+  version = "1.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "be715cb74ac56db2dd888b016097aaa29ab7d7d34c1f8c706ff63f76b3553f71";
+    sha256 = "76c9fda88a7178f41bf6454a06d64054c56b46f0dcbc73307f2e57bb8c25d8cc";
   };
 
   # It's used to locate headers

pkgs/development/python-modules/gunicorn/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "gunicorn";
-  version = "19.8.1";
+  version = "19.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bc59005979efb6d2dd7d5ba72d99f8a8422862ad17ff3a16e900684630dd2a10";
+    sha256 = "fa2662097c66f920f53f70621c6c58ca4a3c4d3434205e608e121b5b3b71f4f3";
   };
 
   checkInputs = [ pytest mock pytestcov coverage ];

pkgs/development/python-modules/hdbscan/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "hdbscan";
-  version = "0.8.13";
+  version = "0.8.15";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "31874db29375816688b5541287a051c9bd768f2499ccf1f6a4d88d266530e2a6";
+    sha256 = "446f98e1ea622a39c1f396d839fa2b1c35db98234e373336de61c3bd6ffaec78";
   };
 
   checkInputs = [ nose ];

pkgs/development/python-modules/howdoi/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "howdoi";
-  version = "1.1.7";
+  version = "1.1.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1dx9ms0b3z3bx02paj78cyi788d8l6cpd3jqbn3j88w736i4jknz";
+    sha256 = "96f5e057fd45a84379d77e46233165d95211e6b3ea869cb5c0df172aa322b566";
   };
 
   propagatedBuildInputs = [ six requests-cache pygments pyquery ];

pkgs/development/python-modules/hvac/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "hvac";
-  version = "0.6.0";
+  version = "0.6.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e7b8425ce36894cda8b8ed3387a47119edc517302e6a72942602df54a96ee453";
+    sha256 = "4bc80744df5f09882b1cc91755b03b7b62b093fc63c8c4abb26fbfb9c9e878dd";
   };
 
   propagatedBuildInputs = [ requests ];

pkgs/development/python-modules/hypothesis/default.nix

@@ -9,23 +9,24 @@ buildPythonPackage rec {
   # pytz fake_factory django numpy pytest
   # If you need these, you can just add them to your environment.
 
-  version = "3.45.2";
+  version = "3.66.2";
   pname = "hypothesis";
 
-  # Upstream prefers github tarballs
+  # Use github tarballs that includes tests
   src = fetchFromGitHub {
     owner = "HypothesisWorks";
     repo = "hypothesis-python";
-    rev = version;
+    rev = "hypothesis-python-${version}";
-    sha256 = "063sn5m1966gvm3wrlxczdq4vw0r94h3nd9xpr94qxahpg2r4bpb";
+    sha256 = "17ywbwa76z7f0pgash0003fvm25fsj7hxdrdiprdbv99y3i8bm88";
   };
 
+  postUnpack = "sourceRoot=$sourceRoot/hypothesis-python";
+
   propagatedBuildInputs = [ attrs coverage ] ++ lib.optional (!isPy3k) [ enum34 ];
 
   checkInputs = [ pytest pytest_xdist flaky mock ];
   inherit doCheck;
 
-  # https://github.com/DRMacIver/hypothesis/issues/300
   checkPhase = ''
     rm tox.ini # This file changes how py.test runs and breaks it
     py.test tests/cover

pkgs/development/python-modules/ibmquantumexperience/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "IBMQuantumExperience";
-  version = "1.9.6";
+  version = "1.9.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "83baa3c88979df67e7be929b147d253cffe45a7f7f5657f87fbe945819e9ce24";
+    sha256 = "78a7d9770fa2884d79d3c8b18f374644866e4d22ec151cf703053f7530bb7b7c";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/idna-ssl/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "idna-ssl";
-  version = "1.0.1";
+  version = "1.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1293f030bc608e9aa9cdee72aa93c1521bbb9c7698068c61c9ada6772162b979";
+    sha256 = "a933e3bb13da54383f9e8f35dc4f9cb9eb9b3b78c6b36f311254d6d0d92c6c7c";
   };
 
   propagatedBuildInputs = [ idna ];

pkgs/development/python-modules/invoke/default.nix

@@ -0,0 +1,22 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "invoke";
+  version = "1.1.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0aiy1xvk1f91246zxd1zqrm679vdvd10h843a2na41cqr3cflpi6";
+  };
+
+  # errors with vendored libs
+  doCheck = false;
+
+  meta = {
+    description = "Pythonic task execution";
+    license = lib.licenses.bsd2;
+  };
+}

pkgs/development/python-modules/ipyparallel/default.nix

@@ -16,11 +16,11 @@
 
 buildPythonPackage rec {
   pname = "ipyparallel";
-  version = "6.2.1";
+  version = "6.2.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9afb0001d6fa2eca9340e9daab5da021db05211987868f47ab5b305d701cb12d";
+    sha256 = "02b225966d5c20f12b1fba0b6b10aa5d352a6b492e075f137ff0ff6e95b9358e";
   };
 
   buildInputs = [ nose ];

pkgs/development/python-modules/ipython/default.nix

@@ -3,6 +3,7 @@
 , buildPythonPackage
 , fetchPypi
 , pythonOlder
+, fetchpatch
 # Build dependencies
 , glibcLocales
 # Test dependencies
@@ -34,6 +35,12 @@ buildPythonPackage rec {
     substituteInPlace setup.py --replace "'gnureadline'" " "
   '';
 
+  # Upgrade to prompt_toolkit 2.0
+  patches = fetchpatch {
+    url = https://github.com/ipython/ipython/commit/8e256bd37373f98580ba1ef1d3fcfd7976802238.patch;
+    sha256 = "1d9qy2z21n4frf15g4aj7xi011d1d3qc31gs27f2v23j0gv69r9h";
+  };
+
   buildInputs = [ glibcLocales ];
 
   checkInputs = [ nose pygments ];

pkgs/development/python-modules/ipywidgets/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "ipywidgets";
-  version = "7.2.1";
+  version = "7.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ab9869cda5af7ba449d8f707b29b7e97a7db97d6366805d6b733338f51096f54";
+    sha256 = "3ce93db970a94f06f38121da70757cdbcce884ecd14f79a4dd9bc49a47e0f33b";
   };
 
   # Tests are not distributed

pkgs/development/python-modules/jaraco_functools/default.nix

@@ -0,0 +1,25 @@
+{ lib, buildPythonPackage, fetchPypi
+, setuptools_scm
+, more-itertools, backports_functools_lru_cache }:
+
+buildPythonPackage rec {
+  pname = "jaraco.functools";
+  version = "1.20";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "bad775f06e58bb8de5563bc2a8bf704168919e6779d6e849b1ca58b443e97f3b";
+  };
+
+  propagatedBuildInputs = [ more-itertools backports_functools_lru_cache ];
+
+  doCheck = false;
+
+  buildInputs = [ setuptools_scm ];
+
+  meta = with lib; {
+    description = "Additional functools in the spirit of stdlib's functools";
+    homepage = https://github.com/jaraco/jaraco.functools;
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/jdatetime/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "jdatetime";
-  version = "2.1.0";
+  version = "2.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ac5646460defa5bf3d062504d870954c77d6234536365baf52433fb845b620d0";
+    sha256 = "030a47ad3acbde45cb03872e2c6415c675dbb4a82462302971e93076145b5096";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/jedi/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "jedi";
-  version = "0.12.0";
+  version = "0.12.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1bcr7csx4xil1iwmk03d79jis0bkmgi9k0kir3xa4rmwqsagcwhr";
+    sha256 = "b409ed0f6913a701ed474a614a3bb46e6953639033e31f769ca7581da5bd1ec1";
   };
 
   postPatch = ''

pkgs/development/python-modules/joblib/default.nix

@@ -9,10 +9,10 @@
 
 buildPythonPackage rec {
   pname = "joblib";
-  version = "0.11";
+  version = "0.12.1";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7b8fd56df36d9731a83729395ccb85a3b401f62a96255deb1a77220c00ed4085";
+    sha256 = "68e6128e4734196616a39e2d48830ec7d61551c7f5748849e4c91478d2444524";
   };
 
   checkInputs = [ sphinx numpydoc pytest ];

pkgs/development/python-modules/jsonrpc-async/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-async";
-  version = "0.6";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0f1p3qv56jn4sdyp8gzf915nya6vr0rn2pbzld9x23y9jdjmibzw";
+    sha256 = "6241a221b52e18265fe6bb59c60633acebb6fb5ef8c04de9a076b757aa133b86";
   };
 
   propagatedBuildInputs = [ aiohttp jsonrpc-base ];

pkgs/development/python-modules/jsonrpc-base/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-base";
-  version = "1.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1dl55n54ha5kf4x6hap2p1k3s4qa4w7g791wp2656rjg2zxfgywk";
+    sha256 = "21f860c915617f6475aa1ac5a1ec11de03cce6b279741f25ad97d8a4c5b76c3c";
   };
 
   propagatedBuildInputs = [ ];

pkgs/development/python-modules/jsonrpc-websocket/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpc-websocket";
-  version = "0.6";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cf349bee4ab96db2e457b6a71a45380e1a9cf3e1ceb08260ecfd9928040ebe71";
+    sha256 = "40949836996c0a8104e7878997d3f68bda4561e9d3af64e5cd178127ec3c2778";
   };
 
   propagatedBuildInputs = [ aiohttp jsonrpc-base ];

pkgs/development/python-modules/jupyterlab_launcher/default.nix

@@ -1,11 +1,11 @@
 { lib, buildPythonPackage, fetchPypi, jsonschema, notebook }:
 buildPythonPackage rec {
   pname = "jupyterlab_launcher";
-  version = "0.10.5";
+  version = "0.11.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1v1ir182zm2dl14lqvqjhx2x40wnp0i32n6rldxnm1allfpld1n7";
+    sha256 = "236a647f4c3f8417413643a918a893a5f662fb5d2fdccce2fd101e3cca2e7fd1";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/keyring/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "keyring";
-  version = "12.2.1";
+  version = "13.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1zhg2a59rqgigl8apm4s39md6yf3f2v1d4bl6s5rmiigwfifm624";
+    sha256 = "6364bb8c233f28538df4928576f4e051229e0451651073ab20b315488da16a58";
   };
 
   nativeBuildInputs = [ setuptools_scm ];

pkgs/development/python-modules/ldappool/default.nix

@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   name = "ldappool-${version}";
-  version = "2.2.0";
+  version = "2.3.0";
 
   src = fetchPypi {
     pname = "ldappool";
     inherit version;
-    sha256 = "1akmzf51cjfvmd0nvvm562z1w9vq45zsx6fa72kraqgsgxhnrhqz";
+    sha256 = "899d38e891372981166350c813ff5ce2ad8ac383311edccda8102362c1d60952";
   };
 
   nativeBuildInputs = [ pbr ];

pkgs/development/python-modules/ledgerblue/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "ledgerblue";
-  version = "0.1.17";
+  version = "0.1.19";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ac403b074337b9b58cae97ea00b3d94fc8efeea1717a80c49e79dc8aad6fc58f";
+    sha256 = "3969b3c375c0f3fb60ff1645621ebf2f39fb697a53851620705f27ed7b283097";
   };
 
   buildInputs = [ hidapi pycrypto pillow protobuf future ecpy ];

pkgs/development/python-modules/libagent/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "libagent";
-  version = "0.9.8";
+  version = "0.11.3";
 
   src = fetchPypi{
     inherit pname version;
-    sha256 = "7e7d62cedef9d1291b8e77abc463d50b3d685dfd953611d55a0414c12276aa78";
+    sha256 = "cb6199c3572e1223756465e758fb525e7f406a4808e9d7cfdddf089bec710047";
   };
 
   buildInputs = [

pkgs/development/python-modules/libusb1/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "libusb1";
-  version = "1.6.4";
+  version = "1.6.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "03b7xrz8vqg8w0za5r503jhcmbd1ls5610jcja1rqz833nf0v4wc";
+    sha256 = "4707f81e933a97fed1c5bf7d4957f07bae1139cb8084bdee1f50201a40e3fd7c";
   };
 
   postPatch = lib.optionalString stdenv.isLinux ''

pkgs/development/python-modules/llvmlite/default.nix

@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "llvmlite";
-  version = "0.23.2";
+  version = "0.24.0";
 
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1e63f317b8fb3679d3a397920b1e8bade2d5f471f6c60c7e9bf97746f616f79e";
+    sha256 = "320de4c4a1c105b91629305be069d217f3a9d7fbe32cb22bcfb016361895fc07";
   };
 
   propagatedBuildInputs = [ llvm ] ++ stdenv.lib.optional (pythonOlder "3.4") enum34;

pkgs/development/python-modules/logilab/common.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "logilab-common";
-  version = "1.4.1";
+  version = "1.4.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "02in5555iak50gzn35bnnha9s85idmh0wwxaxz13v81z5krn077d";
+    sha256 = "cdda9ed0deca7c68f87f7a404ad742e47aaa1ca5956d12988236a5ec3bda13a0";
   };
 
   propagatedBuildInputs = [ unittest2 six ];

pkgs/development/python-modules/lxml/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "lxml";
-  version = "4.2.1";
+  version = "4.2.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e2629cdbcad82b83922a3488937632a4983ecc0fed3e5cfbf430d069382eeb9b";
+    sha256 = "622f7e40faef13d232fb52003661f2764ce6cdef3edb0a59af7c1559e4cc36d1";
   };
 
   buildInputs = [ libxml2 libxslt ];

pkgs/development/python-modules/m2r/default.nix

@@ -2,11 +2,11 @@
   mistune, docutils } :
 buildPythonPackage rec {
   pname = "m2r";
-  version = "0.1.14";
+  version = "0.1.15";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a14635cdeedb125f0f85e014eb5898fd634e2da358a160c124818e9c9f851add";
+    sha256 = "1c358d8bf21ff70e569968d604a0e3c9b05fe01b5f362389235e97bc7c0cd542";
   };
 
   propagatedBuildInputs = [ mistune docutils ];

pkgs/development/python-modules/marionette-harness/mozinfo.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "mozinfo";
-  version = "0.9";
+  version = "0.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1jwhnhbj7xipwh33wf7m12pw5g662dpr1chkp6p2fmy0mwpn2y4z";
+    sha256 = "dcd53a1b1793340418e1ae42bf300e3e56d8f12047972378c6f9318b220b1023";
   };
 
   disabled = isPy3k;

pkgs/development/python-modules/marionette-harness/mozlog.nix

@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "mozlog";
-  version = "3.7";
+  version = "3.8";
 
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "414141131c4f5e7242e69a939d2b74f4ed8dbac12bef93eee4e7125cd1a131e9";
+    sha256 = "af3a3252bc58f8642a641601ba59096c22e4aa49cdc1ed4b0df2314f4f027f0d";
   };
 
   propagatedBuildInputs = [ blessings mozterm six ];

pkgs/development/python-modules/mozterm/default.nix

@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "mozterm";
-  version = "0.1.0";
+  version = "1.0.0";
 
   # name 'unicode' is not defined
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4ebf8bd772d97c0f557184173f0f96cfca0abfc07e1ae975fbcfa76be50b5561";
+    sha256 = "b1e91acec188de07c704dbb7b0100a7be5c1e06567b3beb67f6ea11d00a483a4";
   };
 
   meta = with lib; {

pkgs/development/python-modules/msgpack-numpy/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "msgpack-numpy";
-  version = "0.4.3";
+  version = "0.4.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9d6da0bbb04d7cab2bf9f08f78232c954f00ac95cf2384149e779a31ce859126";
+    sha256 = "31fd5dd009bbee7f8b107db8c859e3a0a2793acc196f25ffbbae1e71b4c63ca5";
   };
 
   buildInputs = [

pkgs/development/python-modules/mutagen/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "mutagen";
-  version = "1.40.0";
+  version = "1.41.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ppfmpf60c78p4yp7in3f8y1l1fd34a38vw9swpg2fl6hz7c58mj";
+    sha256 = "dab6038c7f0e17c1b67fb8f56303e8be21e73ac47760f1a8e716856f1bdf5057";
   };
 
   checkInputs = [

pkgs/development/python-modules/mypy/default.nix

@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "mypy";
-  version = "0.610";
+  version = "0.620";
 
   # Tests not included in pip package.
   doCheck = false;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0fc7h7hf9042nlqczdvj2ngz2hc7rcnd35qz5pb840j38x9n8wpl";
+    sha256 = "c770605a579fdd4a014e9f0a34b6c7a36ce69b08100ff728e96e27445cef3b3c";
   };
 
   disabled = !isPy3k;