- Some Ruby interpreter bumped version

- Kernel headers 2.6.18 added (XEN virtual images)
- unifdef package added for kernel headers 2.6.18
- Python Zope and 4suite added
- Trying bioconductor packages with R-lang (still failing)
- Bumped gmp version
- Added rq cluster runner - still requires extra gems (installs, but does not run)


svn path=/nixpkgs/trunk/; revision=12766

pkgs/development/libraries/science/biology/bioconductor/bioconductor.nix

@@ -0,0 +1,43 @@
+{stdenv, fetchurl, rLang}:
+
+let
+
+  /* Function to compile Bioconductor packages */
+
+  buildBioConductor =
+    { pname, pver, src, postInstall ? ""}:
+
+    stdenv.mkDerivation {
+      name = "${pname}-${pver}";
+
+      inherit src;
+
+      buildInputs = [rLang];
+
+      # dontAddPrefix = true;
+
+      # preBuild = "makeFlagsArray=(dictdir=$out/lib/aspell datadir=$out/lib/aspell)";
+
+      inherit postInstall;
+      installPhase = ''
+        R CMD INSTALL ${affyioSrc}
+      '';
+
+      meta = {
+        description = "Bioconductor package for ${pname}";
+      };
+    };
+
+in {
+
+   affyio = buildBioC {
+     pname = "affyio";
+     pver  = "1.8.1";
+     src = fetchurl {
+       url = http://www.bioconductor.org/packages/release/bioc/src/contrib/affyio_1.8.1.tar.gz;
+       sha256 = "136nkpq870vrwf9z5gq32xjzrp8bjfbk9pn8fki2a5w2lr0qc8nh";
+     };
+  };
+
+    
+}