Merge staging-next into staging

pkgs/development/python-modules/WSME/default.nix

@@ -1,7 +1,23 @@
-{ lib, buildPythonPackage, fetchPypi, isPy3k
-, pbr, six, simplegeneric, netaddr, pytz, webob
-, cornice, nose, webtest, pecan, transaction, cherrypy, sphinx
-, flask, flask-restful, suds-jurko, glibcLocales }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pbr
+, six
+, simplegeneric
+, netaddr
+, pytz
+, webob
+# Test inputs
+, cherrypy
+, flask
+, flask-restful
+, glibcLocales
+, nose
+, pecan
+, sphinx
+, transaction
+, webtest
+}:
 
 buildPythonPackage rec {
   pname = "WSME";
@@ -12,38 +28,37 @@ buildPythonPackage rec {
     sha256 = "965b9ce48161e5c50d84aedcf50dca698f05bf07e9d489201bccaec3141cd304";
   };
 
-  postPatch = ''
-    # remove turbogears tests as we don't have it packaged
-    rm tests/test_tg*
-    # WSME seems incompatible with recent SQLAlchemy version
-    rm wsmeext/tests/test_sqlalchemy*
-    # https://bugs.launchpad.net/wsme/+bug/1510823
-    ${if isPy3k then "rm tests/test_cornice.py" else ""}
-  '';
-
-  checkPhae = ''
-    nosetests --exclude test_buildhtml \
-              --exlcude test_custom_clientside_error \
-              --exclude test_custom_non_http_clientside_error
-  '';
-
-  # UnicodeEncodeError, ImportError, ...
-  doCheck = !isPy3k;
-
   nativeBuildInputs = [ pbr ];
 
   propagatedBuildInputs = [
-    six simplegeneric netaddr pytz webob
+    netaddr
+    pytz
+    simplegeneric
+    six
+    webob
   ];
 
   checkInputs = [
-    cornice nose webtest pecan transaction cherrypy sphinx
-    flask flask-restful suds-jurko glibcLocales
+    nose
+    cherrypy
+    flask
+    flask-restful
+    glibcLocales
+    pecan
+    sphinx
+    transaction
+    webtest
   ];
 
+  # from tox.ini, tests don't work with pytest
+  checkPhase = ''
+    nosetests wsme/tests tests/pecantest tests/test_sphinxext.py tests/test_flask.py --verbose
+  '';
+
   meta = with lib; {
     description = "Simplify the writing of REST APIs, and extend them with additional protocols";
-    homepage = "http://git.openstack.org/cgit/openstack/wsme";
+    homepage = "https://pythonhosted.org/WSME/";
+    changelog = "https://pythonhosted.org/WSME/changes.html";
     license = licenses.mit;
   };
 }

pkgs/development/python-modules/b2sdk/default.nix

@@ -0,0 +1,28 @@
+{ stdenv, buildPythonPackage, fetchPypi, setuptools_scm, isPy27, pytestCheckHook
+, requests, arrow, logfury, tqdm }:
+
+buildPythonPackage rec {
+  pname = "b2sdk";
+  version = "1.1.4";
+
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0g527qdda105r5g9yjh4lxzlmz34m2bdz8dydqqy09igdsmiyi9j";
+  };
+
+  pythonImportsCheck = [ "b2sdk" ];
+
+  nativebuildInputs = [ setuptools_scm ];
+  propagatedBuildInputs = [ requests arrow logfury tqdm ];
+
+  # requires unpackaged dependencies like liccheck
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Client library and utilities for access to B2 Cloud Storage (backblaze).";
+    homepage = "https://github.com/Backblaze/b2-sdk-python";
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/behave/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub
 , buildPythonApplication, python
-, mock, pathpy, pyhamcrest, pytest, pytest-html
+, pytestCheckHook, mock, pathpy, pyhamcrest, pytest-html
 , glibcLocales
 , colorama, cucumber-tag-expressions, parse, parse-type, six
 }:
@@ -16,7 +16,7 @@ buildPythonApplication rec {
     sha256 = "1ssgixmqlg8sxsyalr83a1970njc2wg3zl8idsmxnsljwacv7qwv";
   };
 
-  checkInputs = [ mock pathpy pyhamcrest pytest pytest-html ];
+  checkInputs = [ pytestCheckHook mock pathpy pyhamcrest pytest-html ];
   buildInputs = [ glibcLocales ];
   propagatedBuildInputs = [ colorama cucumber-tag-expressions parse parse-type six ];
 
@@ -24,14 +24,14 @@ buildPythonApplication rec {
     patchShebangs bin
   '';
 
-  doCheck = true;
+  # timing-based test flaky on Darwin
+  # https://github.com/NixOS/nixpkgs/pull/97737#issuecomment-691489824
+  disabledTests = stdenv.lib.optionals stdenv.isDarwin [ "test_step_decorator_async_run_until_complete" ];
 
-  checkPhase = ''
+  postCheck = ''
     export LANG="en_US.UTF-8"
     export LC_ALL="en_US.UTF-8"
 
-    pytest tests
-
     ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' features/
     ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' tools/test-features/
     ${python.interpreter} bin/behave -f progress3 --stop --tags='~@xfail' issue.features/

pkgs/development/python-modules/bokeh/default.nix

@@ -33,11 +33,11 @@
 
 buildPythonPackage rec {
   pname = "bokeh";
-  version = "2.1.1";
+  version = "2.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2dfabf228f55676b88acc464f416e2b13ee06470a8ad1dd3e609bb789425fbad";
+    sha256 = "qC6e69eh4uu3+PwerYAv79EKhNrvjsS/yYYSEyOUhVU=";
   };
 
   patches = [

pkgs/development/python-modules/buildbot/default.nix

@@ -25,11 +25,11 @@ let
 
   package = buildPythonPackage rec {
     pname = "buildbot";
-    version = "2.8.2";
+    version = "2.8.4";
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "0rdrz2zkd6xaf9kb5l41xmbfzq618sz498w23irshih4c802pdv5";
+      sha256 = "0i2sbxhsqyk2yr234il0zsyp1rf2v1l5hmzvw0yrgds6jpr19cqv";
     };
 
     propagatedBuildInputs = [

pkgs/development/python-modules/buildbot/pkg.nix

@@ -6,7 +6,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1yz3k6dg15q4911x8kjy396dccfgrs50mjz278l09p6zmm71llax";
+    sha256 = "1p9qnrqx72y4jrhawgbpwisgily7zg4rh39hpky4x56d5afvjgqc";
   };
 
   postPatch = ''

pkgs/development/python-modules/buildbot/plugins.nix

@@ -7,7 +7,7 @@
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "19qwr0h6qavznx8rfjq6zjccyd2y7x4nc8asldvay3b44xfsr385";
+      sha256 = "1hi44jbnafp7iqncad01hwr087aqmdszvc2if0d9gw6bm159zf4s";
     };
 
     # Remove unneccessary circular dependency on buildbot
@@ -34,7 +34,7 @@
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "1wfhwmb1d32k8isk7k8525pmkfih8hlvy53zsj19l3gvjm0da9gw";
+      sha256 = "1vkh4kdlnm9z5r62b4vxx6qxc90g65gm1m4qxfc6xjk1265i1w6h";
     };
 
     buildInputs = [ buildbot-pkg ];
@@ -56,7 +56,7 @@
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "0g62v0maz3b9bmjvvjcin6ayg0f5k0n8m93zk75lagyr69g5vaka";
+      sha256 = "0v94p1m9fb6m6ik5xyi7bs4jrsgvnyf3sl7f4w1qmb24xc47k2gj";
     };
 
     buildInputs = [ buildbot-pkg ];
@@ -78,7 +78,7 @@
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "0dlq8pchgccc66gfdlssydacisia5fbwc8b4gd8f9gcbish8jmf7";
+      sha256 = "13bg289al6dmyrin3l6ih3sk7hm660m69kls3kpagg6j6nmpa5wz";
     };
 
     buildInputs = [ buildbot-pkg ];
@@ -100,7 +100,7 @@
 
     src = fetchPypi {
       inherit pname version;
-      sha256 = "193nni55py6yzw730yyp5va2n4313sjf6a7jmi0xs9bivvvzg5w9";
+      sha256 = "11cr7m7m8ah8qqjcqj7qvjjak62cx1sq41cazd4i3r07dyhc3ypn";
     };
 
     buildInputs = [ buildbot-pkg ];

pkgs/development/python-modules/buildbot/worker.nix

@@ -7,7 +7,7 @@ buildPythonPackage (rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0p1w6ailp6xpa6ckl5prj413ilxx5s3lga5mzqxj9nn00vni8ik2";
+    sha256 = "1v1bcc2m4pz90rsh5pjb9m9agkvhqdk1viyf64gi1h85h191vkib";
   };
 
   propagatedBuildInputs = [ twisted future ];

pkgs/development/python-modules/dbus-next/default.nix

@@ -0,0 +1,41 @@
+{ stdenv
+, buildPythonPackage
+, fetchFromGitHub
+, python
+, dbus, dbus-python, pytest, pytestcov, pytest-asyncio, pytest-timeout
+}:
+
+buildPythonPackage rec {
+  pname = "dbus-next";
+  version = "0.1.4";
+
+  src = fetchFromGitHub {
+    owner = "altdesktop";
+    repo = "python-dbus-next";
+    rev = "v${version}";
+    sha256 = "sha256-C/aFDHmt6Qws6ek+++wM5GRN6TEvMGMiFktKIXRdGL0=";
+  };
+
+  checkInputs = [
+    dbus
+    dbus-python
+    pytest
+    pytestcov
+    pytest-asyncio
+    pytest-timeout
+  ];
+
+  # test_peer_interface hits a timeout
+  checkPhase = ''
+    dbus-run-session --config-file=${dbus.daemon}/share/dbus-1/session.conf \
+      ${python.interpreter} -m pytest -sv --cov=dbus_next \
+      -k "not test_peer_interface"
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/altdesktop/python-dbus-next";
+    description = "A zero-dependency DBus library for Python with asyncio support";
+    license = licenses.mit;
+    maintainers = with maintainers; [ sfrijters ];
+  };
+}

pkgs/development/python-modules/dipy/default.nix

@@ -13,7 +13,7 @@
 
 buildPythonPackage rec {
   pname = "dipy";
-  version = "1.1.1";
+  version = "1.2.0";
 
   disabled = isPy27;
 
@@ -21,7 +21,7 @@ buildPythonPackage rec {
     owner  = "dipy";
     repo   = pname;
     rev    = version;
-    sha256 = "08abx0f4li6ya62ilc59miw4mk6wndizahyylxhgcrpacb6ydw28";
+    sha256 = "0x49lph400ndlvk419nd2g9ss4jg75xr7xh88ggv5d2ama19v7py";
   };
 
   nativeBuildInputs = [ cython packaging ];

pkgs/development/python-modules/django/2_2.nix

@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "2.2.15";
+  version = "2.2.16";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3e2f5d172215862abf2bac3138d8a04229d34dbd2d0dab42c6bf33876cc22323";
+    sha256 = "1535g2r322cl4x52fb0dmzlbg23539j2wx6027j54p22xvjlbkv2";
   };
 
   patches = stdenv.lib.optional withGdal

pkgs/development/python-modules/dropbox/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dropbox";
-  version = "10.3.1";
+  version = "10.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6de5f6f36aad32d4382f3d0ad88ee85a22d81d638c960667b8e1ada05db2f98c";
+    sha256 = "sha256-INA50DD3wfVPItGCgywZCe5bViatUkaaGdJ0vwcEHgY=";
   };
 
   # Set DROPBOX_TOKEN environment variable to a valid token.

pkgs/development/python-modules/http-parser/default.nix

@@ -0,0 +1,31 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "http-parser";
+  version = "0.9.0";
+  format = "pyproject";
+
+  src = fetchFromGitHub {
+    owner = "benoitc";
+    repo = pname;
+    rev = version;
+    sha256 = "05byv1079qi7ypvzm13yf5nc23ink6gr6c5wrhq7fwld4syscy2q";
+  };
+
+  checkInputs = [ pytest ];
+
+  checkPhase = "pytest testing/";
+
+  pythonImportsCheck = [ "http_parser" ];
+
+  meta = with lib; {
+    description = "HTTP request/response parser for python in C";
+    homepage = "https://github.com/benoitc/http-parser";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/development/python-modules/maestral/default.nix

@@ -3,27 +3,28 @@
 , fetchFromGitHub
 , pythonOlder
 , python
-, blinker, bugsnag, click, dropbox, fasteners, keyring, keyrings-alt, pathspec, Pyro5, requests, u-msgpack-python, watchdog
+, blinker, bugsnag, click, dbus-next, dropbox, fasteners, keyring, keyrings-alt, pathspec, Pyro5, requests, sqlalchemy, u-msgpack-python, watchdog
 , sdnotify
 , systemd
 }:
 
 buildPythonPackage rec {
   pname = "maestral";
-  version = "1.1.0";
+  version = "1.2.0";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "SamSchott";
     repo = "maestral";
     rev = "v${version}";
-    sha256 = "0d1pxbg69ll07w4bbpzs7zz1yn82qyrym95b0mqmhrrg2ysxjngg";
+    sha256 = "sha256-/xm6sGios5N68X94GqFFzH1jNSMK1OnvQiEykU9IAZU=";
   };
 
   propagatedBuildInputs = [
     blinker
     bugsnag
     click
+    dbus-next
     dropbox
     fasteners
     keyring
@@ -31,6 +32,7 @@ buildPythonPackage rec {
     pathspec
     Pyro5
     requests
+    sqlalchemy
     u-msgpack-python
     watchdog
   ] ++ stdenv.lib.optionals stdenv.isLinux [

pkgs/development/python-modules/mocket/default.nix

@@ -1,5 +1,6 @@
 { lib, buildPythonPackage, fetchPypi, pythonOlder, isPy27
 , decorator
+, http-parser
 , importlib-metadata
 , python
 , python_magic
@@ -8,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "mocket";
-  version = "3.8.9";
+  version = "3.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "12gfqp7y7w6bgky3daxdggdzp08cg9ss64hbf5f49kywvsmcs01i";
+    sha256 = "1n1h9xbi1my0vgjsh7mfkd51qfa6imjzxnwqccsvshqa8grcv1wm";
   };
 
   patchPhase = ''
@@ -24,6 +25,7 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     decorator
+    http-parser
     python_magic
     urllib3
     six

pkgs/development/python-modules/mohawk/default.nix

@@ -0,0 +1,27 @@
+{ lib, buildPythonPackage, fetchPypi, python, mock, nose, pytest, six }:
+
+with lib;
+buildPythonPackage rec {
+  pname = "mohawk";
+  version = "1.1.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "08wppsv65yd0gdxy5zwq37yp6jmxakfz4a2yx5wwq2d222my786j";
+  };
+
+  propagatedBuildInputs = [ six ];
+
+  checkInputs = [ mock nose pytest ];
+
+  checkPhase = ''
+    pytest mohawk/tests.py
+  '';
+
+  meta = {
+    description = "Python library for Hawk HTTP authorization.";
+    homepage = "https://github.com/kumar303/mohawk";
+    license = licenses.mpl20;
+    maintainers = [ ];
+  };
+}

pkgs/development/python-modules/parse/default.nix

@@ -3,11 +3,11 @@
 }:
 buildPythonPackage rec {
   pname = "parse";
-  version = "1.16.0";
+  version = "1.18.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cd89e57aed38dcf3e0ff8253f53121a3b23e6181758993323658bffc048a5c19";
+    sha256 = "91666032d6723dc5905248417ef0dc9e4c51df9526aaeef271eacad6491f06a4";
   };
 
   checkPhase = ''

pkgs/development/python-modules/pecan/default.nix

@@ -1,38 +1,59 @@
 { stdenv
 , fetchPypi
 , buildPythonPackage
+, isPy27
 # Python deps
-, singledispatch
 , logutils
-, webtest
 , Mako
+, singledispatch
+, six
+, webtest
+# Test Inputs
+, pytestCheckHook
 , genshi
-, Kajiki
-, sqlalchemy
 , gunicorn
 , jinja2
-, virtualenv
+, Kajiki
 , mock
+, sqlalchemy
+, uwsgi
+, virtualenv
 }:
 
 buildPythonPackage rec {
   pname = "pecan";
-  version = "1.3.3";
+  version = "1.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b5461add4e3f35a7ee377b3d7f72ff13e93f40f3823b3208ab978b29bde936ff";
+    sha256 = "4b2acd6802a04b59e306d0a6ccf37701d24376f4dc044bbbafba3afdf9d3389a";
   };
 
-  propagatedBuildInputs = [ singledispatch logutils ];
-  buildInputs = [
-    webtest Mako genshi Kajiki sqlalchemy gunicorn jinja2 virtualenv
+  propagatedBuildInputs = [
+    logutils
+    Mako
+    singledispatch
+    six
+    webtest
   ];
 
-  checkInputs = [ mock ];
+  checkInputs = [
+    pytestCheckHook
+    genshi
+    gunicorn
+    jinja2
+    mock
+    sqlalchemy
+    virtualenv
+  ] ++ stdenv.lib.optionals isPy27 [ Kajiki ];
+
+  pytestFlagsArray = [
+    "--pyargs pecan "
+  ];
 
   meta = with stdenv.lib; {
     description = "Pecan";
-    homepage = "https://github.com/pecan/pecan";
+    homepage = "http://www.pecanpy.org/";
+    changelog = "https://pecan.readthedocs.io/en/latest/changes.html";
   };
 }

pkgs/development/python-modules/pykdl/default.nix

@@ -0,0 +1,20 @@
+{ lib, stdenv, toPythonModule, cmake, orocos-kdl, python, sip }:
+
+toPythonModule (stdenv.mkDerivation {
+  pname = "pykdl";
+  inherit (orocos-kdl) version src;
+
+  sourceRoot = "source/python_orocos_kdl";
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ orocos-kdl ];
+  propagatedBuildInputs = [ python sip ];
+
+  meta = with lib; {
+    description = "Kinematics and Dynamics Library (Python bindings)";
+    homepage = "https://www.orocos.org/kdl.html";
+    license = licenses.lgpl21Only;
+    maintainers = with maintainers; [ lopsided98 ];
+    platforms = platforms.all;
+  };
+})

pkgs/development/python-modules/python-docx/default.nix

@@ -22,6 +22,7 @@ buildPythonPackage rec {
 
   checkPhase = ''
     py.test tests
+    behave --format progress --stop --tags=-wip
   '';
 
   meta = {

pkgs/development/python-modules/pyxnat/default.nix

@@ -0,0 +1,34 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy27
+, nose
+, lxml
+, requests
+}:
+
+buildPythonPackage rec {
+  pname = "pyxnat";
+  version = "1.3";
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "113d13cs5ab7wy4vmyqyh8isjhlgfvan7y2g8n25vcpn3j4j00h0";
+  };
+
+  propagatedBuildInputs = [ lxml requests ];
+
+  checkInputs = [ nose ];
+  checkPhase = "nosetests pyxnat/tests";
+  doCheck = false;  # requires a docker container running an XNAT server
+
+  pythonImportsCheck = [ "pyxnat" ];
+
+  meta = with lib; {
+    homepage = "https://pyxnat.github.io/pyxnat";
+    description = "Python API to XNAT";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}

pkgs/development/python-modules/rising/default.nix

@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, isPy27
+, fetchFromGitHub
+, pytestCheckHook
+, pytestcov
+, dill
+, numpy
+, pytorch
+, threadpoolctl
+, tqdm
+}:
+
+buildPythonPackage rec {
+  pname = "rising";
+  version = "0.2.0post0";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = "PhoenixDL";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "0fb9894ppcp18wc2dhhjizj8ja53gbv9wpql4mixxxdz8z2bn33c";
+  };
+
+  propagatedBuildInputs = [ numpy pytorch threadpoolctl tqdm ];
+  checkInputs = [ dill pytestcov pytestCheckHook ];
+
+  disabledTests = [ "test_affine" ];  # deprecated division operator '/'
+
+  meta = {
+    description = "High-performance data loading and augmentation library in PyTorch";
+    homepage = "https://rising.rtfd.io";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ bcdarwin ];
+  };
+}

pkgs/development/python-modules/scikits-odes/default.nix

@@ -6,6 +6,7 @@
 , cython
 , enum34
 , gfortran
+, isPy27
 , isPy3k
 , numpy
 , pytest
@@ -18,6 +19,8 @@ buildPythonPackage rec {
   pname = "scikits.odes";
   version = "2.6.1";
 
+  disabled = isPy27;
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "0kbf2n16h9s35x6pavlx6sff0pqr68i0x0609z92a4vadni32n6b";

pkgs/development/python-modules/spyder-kernels/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "spyder-kernels";
-  version = "1.9.3";
+  version = "1.9.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "877109d0691376f8ffb380ec1daf9b867958231065660277dbc5ccf0b4bf87d0";
+    sha256 = "ca9d997c475b714b54d2fd67aa140837ec3630e91cbbc2e0cd190f1b0bd9fe9d";
   };
 
   propagatedBuildInputs = [
@@ -23,7 +23,9 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Jupyter kernels for Spyder's console";
-    homepage = "https://github.com/spyder-ide/spyder-kernels";
+    homepage = "https://docs.spyder-ide.org/current/ipythonconsole.html";
+    downloadPage = "https://github.com/spyder-ide/spyder-kernels/releases";
+    changelog = "https://github.com/spyder-ide/spyder-kernels/blob/master/CHANGELOG.md";
     license = licenses.mit;
     maintainers = with maintainers; [ gebner ];
   };

pkgs/development/python-modules/spyder/default.nix

@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "spyder";
-  version = "4.1.4";
+  version = "4.1.5";
 
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6946b2128afaf1b64e878a74d33f9abd60c91f75949b3d05f305b3c3f5fec1e2";
+    sha256 = "d467f020b694193873a237ce6744ae36bd5a59f4d2b7ffbeb15dda68b03f5aa1";
   };
 
   nativeBuildInputs = [ pyqtwebengine.wrapQtAppsHook ];
@@ -42,7 +42,10 @@ buildPythonPackage rec {
     # remove dependency on pyqtwebengine
     # this is still part of the pyqt 5.11 version we have in nixpkgs
     sed -i /pyqtwebengine/d setup.py
-    substituteInPlace setup.py --replace "pyqt5<5.13" "pyqt5"
+    substituteInPlace setup.py \
+      --replace "pyqt5<5.13" "pyqt5" \
+      --replace "parso==0.7.0" "parso" \
+      --replace "jedi==0.17.1" "jedi"
   '';
 
   postInstall = ''
@@ -69,7 +72,9 @@ buildPythonPackage rec {
       environment for the Python language with advanced editing, interactive
       testing, debugging and introspection features.
     '';
-    homepage = "https://github.com/spyder-ide/spyder/";
+    homepage = "https://www.spyder-ide.org/";
+    downloadPage = "https://github.com/spyder-ide/spyder/releases";
+    changelog = "https://github.com/spyder-ide/spyder/blob/master/CHANGELOG.md";
     license = licenses.mit;
     platforms = platforms.linux;
     maintainers = with maintainers; [ gebner ];

pkgs/development/python-modules/tensorflow/1/default.nix

@@ -132,6 +132,13 @@ let
       })
       ./lift-gast-restriction.patch
 
+      (fetchpatch {
+        # fix compilation with numpy >= 1.19
+        name = "add-const-overload.patch";
+        url = "https://github.com/tensorflow/tensorflow/commit/75ea0b31477d6ba9e990e296bbbd8ca4e7eebadf.patch";
+        sha256 = "1xp1icacig0xm0nmb05sbrf4nw4xbln9fhc308birrv8286zx7wv";
+      })
+
       # cuda 10.2 does not have "-bin2c-path" option anymore
       # https://github.com/tensorflow/tensorflow/issues/34429
       ../cuda-10.2-no-bin2c-path.patch

pkgs/development/python-modules/xarray/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "xarray";
-  version = "0.16.0";
+  version = "0.16.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1js3xr3fl9bwid8hl3w2pnigqzjd2rvkncald5x1x5fg7wjy8pb6";
+    sha256 = "5e1af056ff834bf62ca57da917159328fab21b1f8c25284f92083016bb2d92a5";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/xlib/default.nix

@@ -12,13 +12,13 @@
 
 buildPythonPackage rec {
   pname = "xlib";
-  version = "0.25";
+  version = "0.28";
 
   src = fetchFromGitHub {
     owner = "python-xlib";
     repo = "python-xlib";
     rev = version;
-    sha256 = "1nncx7v9chmgh56afg6dklz3479s5zg3kq91mzh4mj512y0skyki";
+    sha256 = "13551vi65034pjf2g7zkw5dyjqcjfyk32a640g5jr055ssf0bjkc";
   };
 
   checkPhase = ''

pkgs/development/python-modules/yq/default.nix

@@ -0,0 +1,54 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pkgs
+, argcomplete
+, pyyaml
+, xmltodict
+# Test inputs
+, coverage
+, flake8
+, jq
+, pytest
+, unixtools
+, toml
+}:
+
+buildPythonPackage rec {
+  pname = "yq";
+  version = "2.11.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1gp9q5w1bjbw7wmba5hm8ippwvkind0p02n07fqa9jlqglhxhm46";
+  };
+
+  propagatedBuildInputs = [
+    pyyaml
+    xmltodict
+    argcomplete
+  ];
+
+  doCheck = true;
+
+  checkInputs = [
+   unixtools.script
+   pytest
+   coverage
+   flake8
+   pkgs.jq
+   toml
+  ];
+
+  # tests fails if stdin is not a tty
+  checkPhase = "echo | script -c 'pytest ./test/test.py'";
+
+  pythonImportsCheck = [ "yq" ];
+
+  meta = with lib; {
+    description = "Command-line YAML processor - jq wrapper for YAML documents.";
+    homepage = "https://github.com/kislyuk/yq";
+    license = [ licenses.asl20 ];
+    maintainers = [ maintainers.womfoo ];
+  };
+}