From 9b589c7c9ad67e1296ad80556bb3f6d5b370a655 Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Mon, 3 Aug 2020 19:08:57 -0400
Subject: [PATCH] itk4: 4.13.2 -> 4.13.3

---
 pkgs/development/libraries/itk/4.x.nix | 17 ++++++++++-------
 pkgs/top-level/all-packages.nix        | 12 +++++-------
 2 files changed, 15 insertions(+), 14 deletions(-)

diff --git a/pkgs/development/libraries/itk/4.x.nix b/pkgs/development/libraries/itk/4.x.nix
index cd8e70a9976..112b77650d2 100644
--- a/pkgs/development/libraries/itk/4.x.nix
+++ b/pkgs/development/libraries/itk/4.x.nix
@@ -1,11 +1,14 @@
-{ stdenv, fetchurl, cmake, libX11, libuuid, xz, vtk_7 }:
+{ stdenv, fetchFromGitHub, cmake, libX11, libuuid, xz, vtk_7, Cocoa }:
 
 stdenv.mkDerivation rec {
-  name = "itk-4.13.2";
+  pname = "itk";
+  version = "4.13.3";
 
-  src = fetchurl {
-    url = "mirror://sourceforge/itk/InsightToolkit-4.13.2.tar.xz";
-    sha256 = "19cgfpd63gqrvc3m27m394gy2d7w79g5y6lvznb5qqr49lihbgns";
+  src = fetchFromGitHub {
+    owner = "InsightSoftwareConsortium";
+    repo = "ITK";
+    rev = "v${version}";
+    sha256 = "067vkh39jxcvyvn69qjh4vi3wa7vdvm9m6qsg3jmnmm7gzw0kjlm";
   };
 
   cmakeFlags = [
@@ -22,11 +25,11 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
 
   nativeBuildInputs = [ cmake xz ];
-  buildInputs = [ libX11 libuuid vtk_7 ];
+  buildInputs = [ libX11 libuuid vtk_7 ] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa ];
 
   meta = {
     description = "Insight Segmentation and Registration Toolkit";
-    homepage = "http://www.itk.org/";
+    homepage = "https://www.itk.org/";
     license = stdenv.lib.licenses.asl20;
     maintainers = with stdenv.lib.maintainers; [viric];
     platforms = with stdenv.lib.platforms; linux ++ darwin;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 2a9abfc0c7c..d6bfba7c94e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1442,7 +1442,6 @@ in
   bs-platform = callPackage ../development/compilers/bs-platform {};
 
   c3d = callPackage ../applications/graphics/c3d {
-    stdenv = gcc8Stdenv;
     inherit (darwin.apple_sdk.frameworks) Cocoa;
   };
 
@@ -12797,7 +12796,9 @@ in
 
   isso = callPackage ../servers/isso { };
 
-  itk4 = callPackage ../development/libraries/itk/4.x.nix { stdenv = gcc8Stdenv; };
+  itk4 = callPackage ../development/libraries/itk/4.x.nix {
+    inherit (darwin.apple_sdk.frameworks) Cocoa;
+  };
 
   itk = callPackage ../development/libraries/itk {
     inherit (darwin.apple_sdk.frameworks) Cocoa;
@@ -15000,7 +15001,6 @@ in
 
   simpleitk = callPackage ../development/libraries/simpleitk {
     lua = lua51Packages.lua;
-    stdenv = gcc8Stdenv;
   };
 
   sfml = callPackage ../development/libraries/sfml {
@@ -25190,9 +25190,7 @@ in
 
   alliance = callPackage ../applications/science/electronics/alliance { };
 
-  ants = callPackage ../applications/science/biology/ants {
-    stdenv = gcc8Stdenv;
-  };
+  ants = callPackage ../applications/science/biology/ants { };
 
   aragorn = callPackage ../applications/science/biology/aragorn { };
 
@@ -25246,7 +25244,7 @@ in
 
   est-sfs = callPackage ../applications/science/biology/est-sfs { };
 
-  ezminc = callPackage ../applications/science/biology/EZminc { stdenv = gcc8Stdenv; };
+  ezminc = callPackage ../applications/science/biology/EZminc { };
 
   exonerate = callPackage ../applications/science/biology/exonerate { };