Merge pull request #33204 from NixOS/python-unstable

Python: upgrade package set

pkgs/applications/misc/haxor-news/default.nix

@@ -1,15 +1,17 @@
-{ stdenv, fetchurl, pythonPackages }:
+{ stdenv, fetchurl, python }:
 
-pythonPackages.buildPythonApplication rec {
+with python.pkgs;
-  version = "0.4.2";
-  name = "haxor-news-${version}";
 
-  src = fetchurl {
+buildPythonApplication rec {
-    url = "https://github.com/donnemartin/haxor-news/archive/${version}.tar.gz";
+  pname = "haxor-news";
-    sha256 = "0543k5ys044f2a1q8k36djnnq2h2dffnwbkva9snjjy30nlwwdgs";
+  version = "0.4.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "5b9af8338a0f8b95a8133b66ef106553823813ac171c0aefa3f3f2dbeb4d7f88";
   };
 
-  propagatedBuildInputs = with pythonPackages; [
+  propagatedBuildInputs = [
     click
     colorama
     requests
@@ -18,6 +20,12 @@ pythonPackages.buildPythonApplication rec {
     six
   ];
 
+  checkInputs = [ mock ];
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover -s tests -v
+  '';
+
   meta = with stdenv.lib; {
     homepage = https://github.com/donnemartin/haxor-news;
     description = "Browse Hacker News like a haxor";

pkgs/applications/office/watson/default.nix

@@ -1,13 +1,14 @@
-{ stdenv, pythonPackages }:
+{ stdenv, pythonPackages, fetchpatch }:
 
-pythonPackages.buildPythonApplication rec {
+with pythonPackages;
+
+buildPythonApplication rec {
   pname = "td-watson";
-  name = "${pname}-${version}";
+  version = "1.5.2";
-  version = "1.4.0";
 
-  src = pythonPackages.fetchPypi {
+  src = fetchPypi {
     inherit version pname;
-    sha256 = "1py0g4990jmvq0dn7jasda7f10kzr41bix46hnbyc1rshjzc17hq";
+    sha256 = "6e03d44a9278807fe5245e9ed0943f13ffb88e11249a02655c84cb86260b27c8";
   };
 
   # uses tox, test invocation fails
@@ -15,8 +16,16 @@ pythonPackages.buildPythonApplication rec {
   checkPhase = ''
     py.test -vs tests
  '';
-  checkInputs = with pythonPackages; [ py pytest pytest-datafiles mock pytest-mock pytestrunner ];
+
-  propagatedBuildInputs = with pythonPackages; [ requests click arrow ];
+  patches = [
+    (fetchpatch {
+      url = https://github.com/TailorDev/Watson/commit/f5760c71cbc22de4e12ede8f6f7257515a9064d3.patch;
+      sha256 = "0s9h26915ilpbd0qhmvk77r3gmrsdrl5l7dqxj0l5q66fp0z6b0g";
+    })
+  ];
+
+  checkInputs = [ py pytest pytest-datafiles mock pytest-mock pytestrunner ];
+  propagatedBuildInputs = [ requests click arrow ];
 
   meta = with stdenv.lib; {
     homepage = https://tailordev.github.io/Watson/;

pkgs/development/python-modules/APScheduler/default.nix

@@ -20,12 +20,12 @@
 
 buildPythonPackage rec {
   pname = "APScheduler";
-  version = "3.4.0";
+  version = "3.5.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b51118a8ed014104f7e440456dcbd90f2015aea7bcc34c57e307fb34bc746316";
+    sha256 = "1ce44d5132b7951f4614067c88ca34cfee1ff97f6f0892581d79b636d83eab89";
   };
 
   buildInputs = [

pkgs/development/python-modules/Mako/default.nix

@@ -0,0 +1,32 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, markupsafe
+, nose
+, mock
+, pytest
+, isPyPy
+}:
+
+buildPythonPackage rec {
+  pname = "Mako";
+  version = "1.0.7";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "4e02fde57bd4abb5ec400181e4c314f56ac3e49ba4fb8b0d50bba18cb27d25ae";
+  };
+
+  checkInputs = [ markupsafe nose mock pytest ];
+  propagatedBuildInputs = [ markupsafe ];
+
+  doCheck = !isPyPy;  # https://bitbucket.org/zzzeek/mako/issue/238/2-tests-failed-on-pypy-24-25
+
+  meta = {
+    description = "Super-fast templating language";
+    homepage = http://www.makotemplates.org;
+    license = lib.licenses.mit;
+    platforms = lib.platforms.unix;
+    maintainers = with lib.maintainers; [ domenkozar ];
+  };
+}

pkgs/development/python-modules/MechanicalSoup/default.nix

@@ -1,5 +1,5 @@
 { fetchPypi, buildPythonPackage, lib
-, requests, beautifulsoup4, six
+, requests, beautifulsoup4, six, lxml
 , pytestrunner, requests-mock, pytestcov, pytest
 }:
 
@@ -7,23 +7,23 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "MechanicalSoup";
-  version = "0.8.0";
+  version = "0.9.0.post4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "38a6ca35428196be94f87f8f036ee4a88b1418d1f77e5634ad92acfaa22c28da";
+    sha256 = "ce8f822afbc9bef1499be417e8d5deecd0cd32606420165700e89477955f03ab";
   };
 
   checkInputs = [ pytest pytestrunner requests-mock pytestcov ];
 
-  propagatedBuildInputs = [ requests beautifulsoup4 six ];
+  propagatedBuildInputs = [ lxml requests beautifulsoup4 six ];
 
   # Requires network
   doCheck = false;
 
   postPatch = ''
     # Is in setup_requires but not used in setup.py...
-    substituteInPlace setup.py --replace "'pytest-runner'," ""
+    substituteInPlace setup.py --replace "'pytest-runner'" ""
   '';
 
   meta = with lib; {

pkgs/development/python-modules/Nikola/default.nix

@@ -30,7 +30,7 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "Nikola";
-  version = "7.8.10";
+  version = "7.8.11";
 
   # Nix contains only Python 3 supported version of doit, which is a dependency
   # of Nikola. Python 2 support would require older doit 0.29.0 (which on the
@@ -47,7 +47,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e242c3d0dd175d95a0baf5268b108081ba160b83ceafec8c9bc2ec0a24a56537";
+    sha256 = "10d95b3af84e61496ef729665eafa2235fd0fd4cc6c57644dd0f2c19a968dd0f";
   };
 
   meta = {

pkgs/development/python-modules/Theano/default.nix

@@ -35,13 +35,13 @@ let
 in buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "Theano";
-  version = "0.9.0";
+  version = "1.0.1";
 
   disabled = isPyPy || pythonOlder "2.6" || (isPy3k && pythonOlder "3.3");
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05xwg00da8smkvkh6ywbywqzj8dw7x840jr74wqhdy9icmqncpbl";
+    sha256 = "88d8aba1fe2b6b75eacf455d01bc7e31e838c5a0fb8c13dde2d9472495ff4662";
   };
 
   postPatch = ''

pkgs/development/python-modules/absl-py/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.1.5";
+  version = "0.1.7";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "94943ed0cd77077fe2d18e79b2f28d3e92f585f7d1c6edc75e640121f3c5d580";
+    sha256 = "4ea22ae860f3a556511291e7f1284942199c81377f47ec4248163defb1b9e6ee";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/aenum/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "aenum";
-  version = "2.0.8";
+  version = "2.0.9";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3209fa41b8c41345442e8d9b5158a57d3e96d84c3d5ebbe8e521e1e2eff1598d";
+    sha256 = "d98bc55136d696fcf323760c3db0de489da9e41fd51283fa6f90205deb85bf6a";
   };
 
   doCheck = !isPy3k;

pkgs/development/python-modules/aiohttp/default.nix

@@ -13,12 +13,12 @@
 
 buildPythonPackage rec {
   pname = "aiohttp";
-  version = "2.3.3";
+  version = "2.3.7";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a2e33e90560dacb819b095b9d9611597925d75d1b93dd9490055d3826d98a82";
+    sha256 = "fe294df38e9c67374263d783a7a29c79372030f5962bd5734fa51c6f4bbfee3b";
   };
 
   disabled = pythonOlder "3.4";

pkgs/development/python-modules/arrow/default.nix

@@ -1,23 +1,22 @@
 { stdenv, buildPythonPackage, fetchPypi
-, nose, chai, simplejson
+, nose, chai, simplejson, backports_functools_lru_cache
 , dateutil }:
 
 buildPythonPackage rec {
-  name = "${pname}-${version}";
   pname = "arrow";
-  version = "0.10.0";
+  version = "0.12.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08n7q2l69hlainds1byd4lxhwrq7zsw7s640zkqc3bs5jkq0cnc0";
+    sha256 = "a15ecfddf334316e3ac8695e48c15d1be0d6038603b33043930dcf0e675c86ee";
   };
 
   checkPhase = ''
     nosetests --cover-package=arrow
   '';
 
-  buildInputs = [ nose chai simplejson ];
+  checkInputs = [ nose chai simplejson ];
-  propagatedBuildInputs = [ dateutil ];
+  propagatedBuildInputs = [ dateutil backports_functools_lru_cache ];
 
   meta = with stdenv.lib; {
     description = "Python library for date manipulation";

pkgs/development/python-modules/asgiref/default.nix

@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchurl, six }:
 buildPythonPackage rec {
-  version = "1.1.2";
+  version = "2.0.1";
   pname = "asgiref";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/a/asgiref/${name}.tar.gz";
-    sha256 = "8b46c3d6e2ad354d9da3cfb9873f9bd46fe1b768fbc11065275ba5430a46700c";
+    sha256 = "c3d70c473a2b7e525e18e68504630943e107f5b32f440c00c8543f94f565c855";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/asn1crypto/default.nix

@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "asn1crypto";
-  version = "0.23.0";
+  version = "0.24.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0874981329cfebb366d6584c3d16e913f2a0eb026c9463efcc4aaf42a9d94d70";
+    sha256 = "9d5c20441baf0cb60a4ac34cc447c6c189024b6b4c6cd7877034f4965c464e49";
   };
 
   # No tests included

pkgs/development/python-modules/astor/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "astor";
-  version = "0.5";
+  version = "0.6.2";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1fdafq5hkis1fxqlmhw0sn44zp2ar46nxhbc22cvwg7hsd8z5gsa";
+    sha256 = "ff6d2e2962d834acb125cc4dcc80c54a8c17c253f4cc9d9c43b5102a560bb75d";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/astroid/default.nix

@@ -6,11 +6,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "astroid";
-  version = "1.5.3";
+  version = "1.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "492c2a2044adbf6a84a671b7522e9295ad2f6a7c781b899014308db25312dd35";
+    sha256 = "71dadba2110008e2c03f9fde662ddd2053db3c0489d0e03c94e828a0399edd4f";
   };
 
   propagatedBuildInputs = [ logilab_common six lazy-object-proxy wrapt ]

pkgs/development/python-modules/astropy/default.nix

@@ -7,13 +7,13 @@
 buildPythonPackage rec {
   
   pname = "astropy";
-  version = "2.0.2";
+  version = "2.0.3";
 
   name = "${pname}-${version}";
   doCheck = false; #Some tests are failing. More importantly setup.py hangs on completion. Needs fixing with a proper shellhook.
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4544a422b1173d79b2d65ba74c627f04a5fd8530d97fb604752d657d754e103d";
+    sha256 = "fdfc0248f6250798ed6d1327be609cb901db89ae01fc768cfbc9e263bdf56f4f";
   };
 
   propagatedBuildInputs = [ pytest numpy ]; # yes it really has pytest in install_requires

pkgs/development/python-modules/attrs/default.nix

@@ -2,17 +2,16 @@
 , pympler, coverage, six, clang }:
 
 buildPythonPackage rec {
-  name = "${pname}-${version}";
   pname = "attrs";
-  version = "17.2.0";
+  version = "17.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "04gx08ikpk26wnq22f7l42gapcvk8iz1512r927k6sadz6cinkax";
+    sha256 = "1c7960ccfd6a005cd9f7ba884e6316b5e430a3f1a6c37c5f87d8b43f83b54ec9";
   };
 
   # macOS needs clang for testing
-  buildInputs = [
+  checkInputs = [
     pytest hypothesis zope_interface pympler coverage six
   ] ++ lib.optionals (stdenv.isDarwin) [ clang ];
 
@@ -20,6 +19,9 @@ buildPythonPackage rec {
     py.test
   '';
 
+  # To prevent infinite recursion with pytest
+  doCheck = false;
+
   meta = with lib; {
     description = "Python attributes without boilerplate";
     homepage = https://github.com/hynek/attrs;

pkgs/development/python-modules/aws-xray-sdk/default.nix

@@ -0,0 +1,29 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, jsonpickle
+, wrapt
+, requests
+}:
+
+buildPythonPackage rec {
+  pname = "aws-xray-sdk";
+  version = "0.95";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "9e7ba8dd08fd2939376c21423376206bff01d0deaea7d7721c6b35921fed1943";
+  };
+
+  propagatedBuildInputs = [
+    jsonpickle wrapt requests
+  ];
+
+  meta = {
+    description = "AWS X-Ray SDK for the Python programming language";
+    license = lib.licenses.asl20;
+    homepage = https://github.com/aws/aws-xray-sdk-python;
+  };
+
+  doCheck = false;
+}

pkgs/development/python-modules/backports_abc/default.nix

@@ -0,0 +1,25 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "backports_abc";
+  version = "0.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "033be54514a03e255df75c5aee8f9e672f663f93abb723444caec8fe43437bde";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover
+  '';
+
+  meta = {
+    homepage = https://github.com/cython/backports_abc;
+    license = lib.licenses.psfl;
+    description = "A backport of recent additions to the 'collections.abc' module";
+  };
+}

pkgs/development/python-modules/backports_functools_lru_cache/default.nix

@@ -0,0 +1,24 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, setuptools_scm
+}:
+
+buildPythonPackage rec {
+  pname = "backports.functools_lru_cache";
+  version = "1.4";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "31f235852f88edc1558d428d890663c49eb4514ffec9f3650e7f3c9e4a12e36f";
+  };
+
+  buildInputs = [ setuptools_scm ];
+  doCheck = false; # No proper test
+
+  meta = {
+    description = "Backport of functools.lru_cache";
+    homepage = https://github.com/jaraco/backports.functools_lru_cache;
+    license = lib.licenses.mit;
+  };
+}

pkgs/development/python-modules/backports_lzma/default.nix

@@ -0,0 +1,32 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+, lzma
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "backports.lzma";
+  version = "0.0.8";
+
+  disabled = isPy3k;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "200584ad5079d8ca6b1bfe14890c7be58666ab0128d8ca26cfb2669b476085f3";
+  };
+
+  buildInputs = [ lzma ];
+
+  # Needs the compiled module in $out
+  checkPhase = ''
+    PYTHONPATH=$out/${python.sitePackages}:$PYTHONPATH ${python.interpreter} -m unittest discover -s test
+  '';
+
+  meta = {
+    description = "Backport of Python 3.3's 'lzma' module for XZ/LZMA compressed files";
+    homepage = https://github.com/peterjc/backports.lzma;
+    license = lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/biopython/default.nix

@@ -0,0 +1,32 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, numpy
+}:
+
+buildPythonPackage rec {
+  pname = "biopython";
+  version = "1.70";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "4a7c5298f03d1a45523f32bae1fffcff323ea9dce007fb1241af092f5ab2e45b";
+  };
+
+  propagatedBuildInputs = [ numpy ];
+  # Checks try to write to $HOME, which does not work with nix
+  doCheck = false;
+  meta = {
+    description = "Python library for bioinformatics";
+    longDescription = ''
+      Biopython is a set of freely available tools for biological computation
+      written in Python by an international team of developers. It is a
+      distributed collaborative effort to develop Python libraries and
+      applications which address the needs of current and future work in
+      bioinformatics.
+    '';
+    homepage = http://biopython.org/wiki/Documentation;
+    maintainers = with lib.maintainers; [ luispedro ];
+    license = lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/bokeh/default.nix

@@ -34,11 +34,11 @@
 buildPythonPackage rec {
   pname = "bokeh";
   name = "${pname}${version}";
-  version = "0.12.10";
+  version = "0.12.13";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6465fae82e94223f16584645b38d34a73d95712870f29c0244649c2cbf2c8393";
+    sha256 = "6e28cbfd88de0c459435278b75f9982591ec0aaa3d37a195052645e1c62e89e3";
   };
 
   disabled = isPyPy;

pkgs/development/python-modules/bootstrapped-pip/default.nix

@@ -9,9 +9,9 @@ let
   };
   setuptools_source = fetchPypi {
     pname = "setuptools";
-    version = "38.2.3";
+    version = "38.2.5";
     format = "wheel";
-    sha256 = "0c4j3jiiwc0h1bdv4xklinp90spgvgiv5fsxp119hif9934nfxfs";
+    sha256 = "bcf0d4f3e2f7890e658db11e218b8643afffb905a0e2f2a7d5a6a3e949bb87e6";
   };
 
   # TODO: Shouldn't be necessary anymore for pip > 9.0.1!

pkgs/development/python-modules/boto3/default.nix

@@ -0,0 +1,50 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, botocore
+, jmespath
+, s3transfer
+, futures
+, docutils
+, nose
+, mock
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname =  "boto3";
+  version = "1.4.8";
+
+  src = fetchFromGitHub {
+    owner = "boto";
+    repo  = "boto3";
+    rev   = version;
+    sha256 = "11ysd7a9l5y98q7b7az56phsj2m7w90abf4jabwrknp2c43sq9bi";
+  };
+
+  propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ];
+  checkInputs = [ docutils nose mock ];
+
+  checkPhase = ''
+    runHook preCheck
+    # This method is not in mock. It might have appeared in some versions.
+    sed -i 's/action.assert_called_once()/self.assertEqual(action.call_count, 1)/' \
+      tests/unit/resources/test_factory.py
+    nosetests -d tests/unit --verbose
+    runHook postCheck
+  '';
+
+  # Network access
+  doCheck = false;
+
+  meta = {
+    homepage = https://github.com/boto/boto3;
+    license = lib.licenses.asl20;
+    description = "AWS SDK for Python";
+    longDescription = ''
+      Boto3 is the Amazon Web Services (AWS) Software Development Kit (SDK) for
+      Python, which allows Python developers to write software that makes use of
+      services like Amazon S3 and Amazon EC2.
+    '';
+  };
+}

pkgs/development/python-modules/botocore/default.nix

@@ -12,11 +12,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "botocore";
-  version = "1.8.10";
+  version = "1.8.21";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "16dznd0mxxs8imsl228vx5s9bz9v7ggajs496jy21n5a19cadkch";
+    sha256 = "e4513a02f68e7efd7494ee56db201d87620218ca879aae361abbb71bcde3aa5f";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/cached-property/default.nix

@@ -0,0 +1,25 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, freezegun
+}:
+
+buildPythonPackage rec {
+  pname = "cached-property";
+  version = "1.3.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "6562f0be134957547421dda11640e8cadfa7c23238fc4e0821ab69efdb1095f3";
+  };
+
+  checkInputs = [ freezegun ];
+
+  meta = {
+    description = "A decorator for caching properties in classes";
+    homepage = https://github.com/pydanny/cached-property;
+    license = lib.licenses.bsd3;
+    platforms = lib.platforms.unix;
+    maintainers = with lib.maintainers; [ ericsagnes ];
+  };
+}

pkgs/development/python-modules/credstash/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname    = "credstash";
-  version = "1.13.4";
+  version = "1.14.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "676cc03a6143dec260c78aeef09d08a64faf27c411f8a94f6d9338e985879f81";
+    sha256 = "718b337f7a6fa001e014386071f05c59900525d0507009126d2fe8d75fe0761d";
   };
 
   propagatedBuildInputs = [ cryptography boto3 pyyaml docutils ];

pkgs/development/python-modules/csscompressor/default.nix

@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchPypi }:
 buildPythonPackage rec {
   pname = "csscompressor";
-  version = "0.9.4";
+  version = "0.9.5";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0e12f125b88379d7b680636d94a3c8fa14bed1de2358f7f9a9e6749e222cff3b";
+    sha256 = "afa22badbcf3120a4f392e4d22f9fff485c044a1feda4a950ecc5eba9dd31a05";
   };
 
   doCheck = false; # No tests

pkgs/development/python-modules/cx_freeze/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "cx_Freeze";
-  version = "5.0.2";
+  version = "5.1.1";
   name  = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zbx9j5z5l06bvwvlqvvn7h9dm7zjcjgxm7agbb625nymkq6cd15";
+    sha256 = "2eadddde670f5c5f6cf88638a0ac4e5d5fe181292a31063275fa56c7bf22426b";
   };
 
   propagatedBuildInputs = [ ncurses ];

pkgs/development/python-modules/cytoolz/default.nix

@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "cytoolz";
-  version = "0.8.2";
+  version = "0.9.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "476a2ad176de5eaef80499b7b43d4f72ba6d23df33d349088dae315e9b31c552";
+    sha256 = "5ebb55855a8bb7800afa58e52408763935527e0305f35600c71b43c86013dec2";
   };
 
   # Extension types

pkgs/development/python-modules/dask/default.nix

@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "dask";
-  version = "0.15.4";
+  version = "0.16.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cb93b8260f5f854ccf26b52bdc700600a08e6b7527085c7b7d63c04238bab9ea";
+    sha256 = "40d150b73e3366c9521e9dde206046a66906330074f87be901b1e1013ce6cb73";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/decorator/default.nix

@@ -0,0 +1,20 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "decorator";
+  version = "4.0.11";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "953d6bf082b100f43229cf547f4f97f97e970f5ad645ee7601d55ff87afdfe76";
+  };
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/decorator;
+    description = "Better living through Python with decorators";
+    license = lib.licenses.mit;
+  };
+}

pkgs/development/python-modules/distro/default.nix

@@ -3,7 +3,7 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "distro";
-  version = "1.0.4";
+  version = "1.2.0";
 
   buildInputs = [ pytest pytestcov tox];
 
@@ -14,7 +14,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9b000b0d637bb0cbd130a7a4835681e6993e309a85564dfea9d884825fe46954";
+    sha256 = "d94370e43b676ac44fbe1ab68ca903a6147eaba3a9e8eff85b2c05556a455b76";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/django-jinja2/default.nix

@@ -5,7 +5,7 @@
 buildPythonPackage rec {
   pname = "django-jinja";
   name = "${pname}-${version}";
-  version = "2.2.2";
+  version = "2.4.1";
 
   meta = {
     description = "Simple and nonobstructive jinja2 integration with Django";
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "099b99iprkvlsndrjmw4v3i3i60i9gm1aq5r88z15r7vgmv6sigj";
+    sha256 = "8a49d73de616a12075eee14c6d3bbab936261a463457d40348d8b8e2995cfbed";
   };
 
   buildInputs = [ django pytz tox ];

pkgs/development/python-modules/djangorestframework/default.nix

@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchurl, django }:
 buildPythonPackage rec {
-  version = "3.7.3";
+  version = "3.7.7";
   pname = "djangorestframework";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/d/djangorestframework/${name}.tar.gz";
-    sha256 = "067960e5e9e5586d3b2d53a1d626c4800dc33cd8309487d404fc63355674556f";
+    sha256 = "9f9e94e8d22b100ed3a43cee8c47a7ff7b185e778a1f2da9ec5c73fc4e081b87";
   };
 
   # Test settings are missing

pkgs/development/python-modules/docker/default.nix

@@ -3,13 +3,13 @@
 , ipaddress, backports_ssl_match_hostname, docker_pycreds
 }:
 buildPythonPackage rec {
-  version = "2.5.1";
+  version = "2.7.0";
   pname = "docker";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/d/docker/${name}.tar.gz";
-    sha256 = "b876e6909d8d2360e0540364c3a952a62847137f4674f2439320ede16d6db880";
+    sha256 = "144248308e8ea31c4863c6d74e1b55daf97cc190b61d0fe7b7313ab920d6a76c";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/docker_compose/default.nix

@@ -3,21 +3,20 @@
 , pyyaml, backports_ssl_match_hostname, colorama, docopt
 , dockerpty, docker, ipaddress, jsonschema, requests
 , six, texttable, websocket_client, cached-property
-, enum34, functools32
+, enum34, functools32,
 }:
 buildPythonApplication rec {
-  version = "1.15.0";
+  version = "1.18.0";
   pname = "docker-compose";
-  name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0yg58m5kk22kihbra0h40miqnbdmkirjr9y47wns613sdikrymmg";
+    sha256 = "2930cbfe2685018fbb75377600ab6288861d9955717b3f14212f63950351d379";
   };
 
   # lots of networking and other fails
   doCheck = false;
-  buildInputs = [ mock pytest nose ];
+  checkInputs = [ mock pytest nose ];
   propagatedBuildInputs = [
     pyyaml backports_ssl_match_hostname colorama dockerpty docker
     ipaddress jsonschema requests six texttable websocket_client
@@ -26,7 +25,7 @@ buildPythonApplication rec {
     stdenv.lib.optional (pythonOlder "3.4") enum34 ++
     stdenv.lib.optional (pythonOlder "3.2") functools32;
 
-  patchPhase = ''
+  postPatch = ''
     # Remove upper bound on requires, see also
     # https://github.com/docker/compose/issues/4431
     sed -i "s/, < .*',$/',/" setup.py

pkgs/development/python-modules/easy-thumbnails/default.nix

@@ -5,7 +5,7 @@
 buildPythonPackage rec {
   pname = "easy-thumbnails";
   name = "${pname}-${version}";
-  version = "2.4.2";
+  version = "2.5";
 
   meta = {
     description = "Easy thumbnails for Django";
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8cad7ea4fb2b800284e842d8a44f685cbc1968535be04c24a4bbf6e6dbc550c4";
+    sha256 = "e244d1f26027fc32c6ca60ffb0169a39099446f614b0433e907a2588ae7d9b95";
   };
 
   propagatedBuildInputs = [ django pillow ];

pkgs/development/python-modules/eve/default.nix

@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "Eve";
-  version = "0.7.4";
+  version = "0.7.5";
   name  = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0xihl5w2m4vkp0515qjibiy88pk380n5jmj8n9hh7q40b1vx1kwb";
+    sha256 = "dd4ffbc4725220ffdc8e32f8566c8870efaecdc238d0f96b18e1e83227eca55d";
   };
 
   patches = [

pkgs/development/python-modules/extras/default.nix

@@ -0,0 +1,23 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "extras";
+  version = "1.0.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "132e36de10b9c91d5d4cc620160a476e0468a88f16c9431817a6729611a81b4e";
+  };
+
+  # error: invalid command 'test'
+  doCheck = false;
+
+  meta = {
+    description = "A module provides basic functions for parsing mime-type names and matching them against a list of media-ranges";
+    homepage = https://code.google.com/p/mimeparse/;
+    license = lib.licenses.mit;
+  };
+}

pkgs/development/python-modules/faker/default.nix

@@ -8,12 +8,12 @@ assert pythonOlder "3.3" -> ipaddress != null;
 
 buildPythonPackage rec {
   pname = "Faker";
-  version = "0.8.7";
+  version = "0.8.8";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bf7dabcd6807c8829da28a4de491adf7998af506b8571db6a6eb58161157248a";
+    sha256 = "e928cf853ef69d7471421f2a3716a1239e43de0fa9855f4016ee0c9f1057328a";
   };
 
   checkInputs = [

pkgs/development/python-modules/faulthandler/default.nix

@@ -3,11 +3,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "faulthandler";
-  version = "2.6";
+  version = "3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zywq3jaznddvqc3hnfrlv24wmpyq4xgajk9xhv6578qw1rpfj2r";
+    sha256 = "acc10e10909f0f956ba1b42b6c450ea0bdaaa27b3942899f65931396cfcdd36a";
   };
 
   meta = {

pkgs/development/python-modules/filelock/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "2.0.13";
+  version = "2.0.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1n67dw7np5gsy5whynyk8c46pjlr353d6j9735p5gryaszkpjl6h";
+    sha256 = "ee355eb66e4c2e5d95689e1253515aad5b3177c274abdd00a57d5ab1aa6d071a";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/fiona/default.nix

@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "Fiona";
-  version = "1.7.10.post1";
+  version = "1.7.11";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fc4c8996be3131f36c791d66273317d38b72b19dc24c2afc332fd734752eb7a8";
+    sha256 = "5e9c68ea71e9d79fcfb68c9a101c0b133301e233c9bcca7b7c65f33cc7636ef5";
   };
 
   buildInputs = [

pkgs/development/python-modules/flake8-debugger/default.nix

@@ -3,10 +3,10 @@
 buildPythonPackage rec {
   pname = "flake8-debugger";
   name = "${pname}-${version}";
-  version = "1.4.0";
+  version = "3.0.0";
   src = fetchurl {
     url = "mirror://pypi/f/flake8-debugger/${name}.tar.gz";
-    sha256 = "0chjfa6wvnqjnx778qzahhwvjx1j0rc8ax0ipp5bn70gf47lj62r";
+    sha256 = "e5c8ac980d819db2f3fbb89fe0e43a2fe6c127edd6ce4984a3f7e0bbdac3d2d4";
   };
   buildInputs = [ nose ];
   propagatedBuildInputs = [ flake8 ];

pkgs/development/python-modules/flask-testing/default.nix

@@ -6,11 +6,11 @@ with stdenv.lib;
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "Flask-Testing";
-  version = "0.6.2";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1w0dpwvrcpffm8ychyxpm8s5blm7slik9kplh9jb3sgwcv9gyppj";
+    sha256 = "dc076623d7d850653a018cb64f500948334c8aeb6b10a5a842bf1bcfb98122bc";
   };
 
   postPatch = ''

pkgs/development/python-modules/flit/default.nix

@@ -11,6 +11,7 @@
 , pytest
 , testpath
 , responses
+, pytoml
 }:
 
 # Flit is actually an application to build universal wheels.
@@ -20,25 +21,22 @@
 
 buildPythonPackage rec {
   pname = "flit";
-  version = "0.11.4";
+  version = "0.13";
-  name = "${pname}-${version}";
-
-#   format = "wheel";
 
   src = fetchPypi {
     inherit pname version;
-#     url = https://files.pythonhosted.org/packages/24/98/50a090112a04d9e29155c31a222637668b0a4dd778fefcd3132adc50e877/flit-0.10-py3-none-any.whl;
+    sha256 = "8f558351bf4bb82b872d3bdbea7055cbb2e33ed2bdf809284bf927d4c78bf0ee";
-    sha256 = "8ba7603cc3bf4149d81811d40fe331abc45ff37a207c63f5f712a0fdb69297bb";
   };
 
   disabled = !isPy3k;
-  propagatedBuildInputs = [ docutils requests requests_download ] ++ lib.optional (pythonOlder "3.6") zipfile36;
+  propagatedBuildInputs = [ docutils requests requests_download pytoml ] ++ lib.optional (pythonOlder "3.6") zipfile36;
 
   checkInputs = [ pytest testpath responses ];
 
   # Disable test that needs some ini file.
+  # Disable test that wants hg
   checkPhase = ''
-    py.test -k "not test_invalid_classifier"
+    py.test -k "not test_invalid_classifier and not test_build_sdist"
   '';
 
   meta = {

pkgs/development/python-modules/fonttools/default.nix

@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "fonttools";
-  version = "3.17.0";
+  version = "3.21.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1c4f26bf32cd58d5881bfe1f42e5f0a1637a58452a60ae1623999f3ae7da0e24";
+    sha256 = "95b5c66d19dbffd57be1636d1f737c7644d280a48c28f933aeb4db73a7c83495";
     extension = "zip";
   };
 

pkgs/development/python-modules/ftfy/default.nix

@@ -11,11 +11,11 @@ buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "ftfy";
   # latest is 5.1.1, buy spaCy requires 4.4.3
-  version = "5.1.1";
+  version = "5.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "67a29a2fad5f72aec2d8a0a7084e4f499ed040455133ee96b1c458609fc29e78";
+    sha256 = "b9f84a1437f68ad0bb964fd9da9f6b88d090113ec9e78f290f6d6d0221468e38";
   };
 
   propagatedBuildInputs = [ html5lib wcwidth];

pkgs/development/python-modules/gensim/default.nix

@@ -13,10 +13,10 @@
 buildPythonPackage rec {
   pname = "gensim";
   name = "${pname}-${version}";
-  version = "3.0.1";
+  version = "3.2.0";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4827012f6f020ac4f4067c2a2a88542391917113faaa417505e1ee8a1e7e2650";
+    sha256 = "db00b68c6567ba0598d400b917c889e8801adf249170ce0a80ec38187d1b0797";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy

pkgs/development/python-modules/google_api_core/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-api-core";
-  version = "0.1.2";
+  version = "0.1.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0qmjswj079w7q7zbnh8p4n2r3f831wymm9hfdlc7zfrini7184xv";
+    sha256 = "03bc4b1ab69c0e113af07e706edee50f583abe8219fe1e1d529dee191cb8e0bf";
   };
 
   propagatedBuildInputs = [ google_auth protobuf googleapis_common_protos requests grpcio ];

pkgs/development/python-modules/gpy/default.nix

@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "GPy";
-  version = "1.8.4";
+  version = "1.8.5";
   name  = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "38c1202f1790952b88c298224139ee5b14d4518e3ddc6186c60db2ece016d8c1";
+    sha256 = "1562e34629192f209273f454e41614a127c6ef04144cd0eb5992d484721d55d3";
   };
 
   # running tests produces "ImportError: cannot import name 'linalg_cython'"

pkgs/development/python-modules/grpcio/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "grpcio";
-  version = "1.7.3";
+  version = "1.8.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wkrxj1jmf2dyx207fc9ysyns9h27gls3drgg05mzdckjqr5lnl6";
+    sha256 = "1ea1336f0d1158c4e00e96a94df84b75f6bbff9816abb6cc68cbdc9442a9ac55";
   };
 
   propagatedBuildInputs = [ six protobuf ]

pkgs/development/python-modules/gssapi/default.nix

@@ -3,12 +3,12 @@ nose, shouldbe, gss, krb5Full, which, darwin }:
 
 buildPythonPackage rec {
   pname = "gssapi";
-  version = "1.2.0";
+  version = "1.3.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1q6ccpz6anl9vggwxdq32wp6xjh2lyfbf7av6jqnmvmyqdfwh3b9";
+    sha256 = "765205082a9490c8e8be88ac16a6249d124396a671665edeec9927a7f244d712";
   };
 
   # It's used to locate headers

pkgs/development/python-modules/html5lib/default.nix

@@ -0,0 +1,42 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, flake8
+, pytest
+, pytest-expect
+, mock
+, six
+, webencodings
+}:
+
+buildPythonPackage rec {
+  pname = "html5lib";
+  version = "1.0.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "66cb0dcfdbbc4f9c3ba1a63fdb511ffdbd4f513b2b6d81b80cd26ce6b3fb3736";
+  };
+
+  checkInputs = [ flake8 pytest pytest-expect mock ];
+  propagatedBuildInputs = [
+    six webencodings
+  ];
+
+  checkPhase = ''
+    py.test
+  '';
+
+  meta = {
+    homepage = https://github.com/html5lib/html5lib-python;
+    downloadPage = https://github.com/html5lib/html5lib-python/releases;
+    description = "HTML parser based on WHAT-WG HTML5 specification";
+    longDescription = ''
+      html5lib is a pure-python library for parsing HTML. It is designed to
+      conform to the WHATWG HTML specification, as is implemented by all
+      major web browsers.
+    '';
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ domenkozar prikhi ];
+  };
+}

pkgs/development/python-modules/htmlmin/default.nix

@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi }:
 buildPythonPackage rec {
   pname = "htmlmin";
-  version = "0.1.11";
+  version = "0.1.12";
   name = "${pname}-${version}";
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f27fb96fdddeb1725ee077be532c7bea23288c69d0e996e7798f24fae7a14e5e";
+    sha256 = "50c1ef4630374a5d723900096a961cff426dff46b48f34d194a81bbe14eca178";
   };
 
   # Tests run fine in a normal source checkout, but not when being built by nix.

pkgs/development/python-modules/httpbin/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "httpbin";
-  version = "0.5.0";
+  version = "0.6.2";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6b57f563900ecfe126015223a259463848daafbdc2687442317c0992773b9054";
+    sha256 = "0afa0486a76305cac441b5cc80d5d4ccd82b20875da7c5119ecfe616cefef45f";
   };
 
   propagatedBuildInputs = [ flask markupsafe decorator itsdangerous six ];

pkgs/development/python-modules/idna/default.nix

@@ -0,0 +1,20 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "idna";
+  version = "2.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2c6a5de3089009e3da7c5dde64a141dbc8551d5b7f6cf4ed7c2568d0cc520a8f";
+  };
+
+  meta = {
+    homepage = "http://github.com/kjd/idna/";
+    description = "Internationalized Domain Names in Applications (IDNA)";
+    license = lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/ipykernel/default.nix

@@ -13,12 +13,12 @@
 
 buildPythonPackage rec {
   pname = "ipykernel";
-  version = "4.6.1";
+  version = "4.7.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2e1825aca4e2585b5adb7953ea16e53f53a62159ed49952a564b1e23507205db";
+    sha256 = "354986612a38f0555c43d5af2425e2a67506b63b313a0325e38904003b9d977b";
   };
 
   buildInputs = [ nose ] ++ lib.optional isPy27 mock;

pkgs/development/python-modules/ipywidgets/default.nix

@@ -14,12 +14,12 @@
 
 buildPythonPackage rec {
   pname = "ipywidgets";
-  version = "7.0.5";
+  version = "7.1.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "321be3dc48193130ba16e8080172bb5cd052eb65e3ad0ea7b5f80ff73e24bc54";
+    sha256 = "3e2be7dea4f97c9a4df71ef065cad9f2e420dd901127bf7cb690fb56d2b34ea3";
   };
 
   # Tests are not distributed

pkgs/development/python-modules/iso8601/default.nix

@@ -0,0 +1,27 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "iso8601";
+  version = "0.1.12";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "49c4b20e1f38aa5cf109ddcd39647ac419f928512c869dc01d5c7098eddede82";
+  };
+
+  checkInputs = [ pytest ];
+
+  checkPhase = ''
+    py.test iso8601
+  '';
+
+  meta = {
+    homepage = https://bitbucket.org/micktwomey/pyiso8601/;
+    description = "Simple module to parse ISO 8601 dates";
+    maintainers = with lib.maintainers; [ phreedom ];
+  };
+}

pkgs/development/python-modules/jdcal/default.nix

@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "jdcal";
+  version = "1.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "b760160f8dc8cc51d17875c6b663fafe64be699e10ce34b6a95184b5aa0fdc9e";
+  };
+
+  checkInputs = [ pytest ];
+
+  checkPhase = ''
+    py.test
+  '';
+
+  meta = {
+    description = "A module containing functions for converting between Julian dates and calendar dates";
+    homepage = "https://github.com/phn/jdcal";
+    license = lib.licenses.bsd2;
+    maintainers = with lib.maintainers; [ lihop ];
+  };
+}

pkgs/development/python-modules/jedi/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "jedi";
-  version = "0.11.0";
+  version = "0.11.1";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f6d5973573e76b1fd2ea75f6dcd6445d02d41ff3af5fc61b275b4e323d1dd396";
+    sha256 = "d6e799d04d1ade9459ed0f20de47c32f2285438956a677d083d3c98def59fa97";
   };
 
   postPatch = ''

pkgs/development/python-modules/jsbeautifier/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonApplication rec {
   pname = "jsbeautifier";
-  version = "1.7.4";
+  version = "1.7.5";
   name = "${pname}-${version}";
 
   propagatedBuildInputs = [ six ];
@@ -11,7 +11,7 @@ buildPythonApplication rec {
 
   src = fetchurl {
     url = "mirror://pypi/j/jsbeautifier/${name}.tar.gz";
-    sha256 = "7fc14f279117a55a5e854602f6e8c1cb178c6d83f7cf75e2e9f50678fe11079e";
+    sha256 = "78eb1e5c8535484f0d0b588aca38da3fb5e0e34de2d1ab53c077e71c55757473";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/jsondiff/default.nix

@@ -0,0 +1,24 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "jsondiff";
+  version = "1.1.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2d0437782de9418efa34e694aa59f43d7adb1899bd9a793f063867ddba8f7893";
+  };
+
+  # No tests
+  doCheck = false;
+
+  meta = {
+    description = "Diff JSON and JSON-like structures in Python";
+    homepage = https://github.com/ZoomerAnalytics/jsondiff;
+    license = lib.licenses.mit;
+  };
+
+}

pkgs/development/python-modules/jsonpatch/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "jsonpatch";
-  version = "1.16";
+  version = "1.21";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f025c28a08ce747429ee746bb21796c3b6417ec82288f8fe6514db7398f2af8a";
+    sha256 = "11f5ffdf543a83047a2f54ac28f8caad7f34724cb1ea26b27547fd974f1a2153";
   };
 
   # test files are missing

pkgs/development/python-modules/jsonpickle/default.nix

@@ -0,0 +1,23 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "jsonpickle";
+  version = "0.9.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "cc25dc79571d4ad7db59d05ddb7de0d76a8d598cf6136e1dbeaa9361ebcfe749";
+  };
+
+  doCheck = false;
+
+  meta = {
+    description = "Python library for serializing any arbitrary object graph into JSON";
+    homepage = http://jsonpickle.github.io/;
+    license = lib.licenses.bsd3;
+  };
+
+}

pkgs/development/python-modules/jupyter_client/default.nix

@@ -1,32 +1,38 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, nose
 , traitlets
 , jupyter_core
 , pyzmq
 , dateutil
 , isPyPy
 , py
+, ipykernel
+, ipython
+, mock
+, pytest
 }:
 
 buildPythonPackage rec {
   pname = "jupyter_client";
-  version = "5.1.0";
+  version = "5.2.0";
-  name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "08756b021765c97bc5665390700a4255c2df31666ead8bff116b368d09912aba";
+    sha256 = "ca30cf1786047925ebacd6f6faa3a993efaa004b584f7d83bc8b807f7cd3f6bb";
   };
 
-  buildInputs = [ nose ];
+  checkInputs = [ ipykernel ipython mock pytest ];
   propagatedBuildInputs = [traitlets jupyter_core pyzmq dateutil] ++ lib.optional isPyPy py;
 
   checkPhase = ''
-    nosetests -v
+    py.test
   '';
 
+  patches = [
+    ./wheel_workaround.patch
+  ];
+
   # Circular dependency with ipykernel
   doCheck = false;
 

pkgs/development/python-modules/jupyter_client/wheel_workaround.patch

@@ -0,0 +1,13 @@
+diff --git a/setup.py b/setup.py
+index 95d4774..ee72cbc 100644
+--- a/setup.py
++++ b/setup.py
+@@ -86,7 +86,7 @@ setup_args = dict(
+     extras_require   = {
+         'test': ['ipykernel', 'ipython', 'mock'],
+         'test:python_version == "3.3"': ['pytest<3.3.0'],
+-        'test:python_version >= "3.4" or python_version == "2.7"': ['pytest'],
++        'test:(python_version >= "3.4" or python_version == "2.7")': ['pytest'],
+     },
+     cmdclass         = {
+         'bdist_egg': bdist_egg if 'bdist_egg' in sys.argv else bdist_egg_disabled,

pkgs/development/python-modules/jupyter_core/default.nix

@@ -11,15 +11,15 @@
 
 buildPythonPackage rec {
   pname = "jupyter_core";
-  version = "4.3.0";
+  version = "4.4.0";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a96b129e1641425bf057c3d46f4f44adce747a7d60107e8ad771045c36514d40";
+    sha256 = "ba70754aa680300306c699790128f6fbd8c306ee5927976cbe48adacf240c0b7";
   };
 
-  buildInputs = [ pytest mock glibcLocales ];
+  checkInputs = [ pytest mock glibcLocales ];
   propagatedBuildInputs = [ ipython traitlets ];
 
   patches = [ ./tests_respect_pythonpath.patch ];

pkgs/development/python-modules/jupyter_core/tests_respect_pythonpath.patch

@@ -1,24 +1,20 @@
---- a/jupyter_core/tests/test_command.py	2016-09-13 15:22:49.000000000 +0200
+--- a/jupyter_core/tests/test_command.py
-+++ b/jupyter_core/tests/test_command.py	2017-10-23 12:49:27.489527705 +0200
++++ b/jupyter_core/tests/test_command.py
-@@ -113,7 +113,10 @@
+@@ -131,7 +131,7 @@ def test_not_on_path(tmpdir):
-     witness = a.join(witness_cmd)
+     witness_src = '#!%s\n%s\n' % (sys.executable, 'print("WITNESS ME")')
-     witness.write('#!%s\n%s\n' % (sys.executable, 'print("WITNESS ME")'))
+     write_executable(witness, witness_src)
-     witness.chmod(0o700)
--    out = check_output([sys.executable, str(jupyter), 'witness'], env={'PATH': ''})
-+    out = check_output(
-+        [sys.executable, str(jupyter), 'witness'],
-+        env={'PATH': '', 'PYTHONPATH': os.environ['PYTHONPATH']}
-+    )
-     assert b'WITNESS' in out
 
+-    env = {'PATH': ''}
++    env = {'PATH': '', 'PYTHONPATH': os.environ['PYTHONPATH']}
+     if 'SYSTEMROOT' in os.environ:  # Windows http://bugs.python.org/issue20614
+         env[str('SYSTEMROOT')] = os.environ['SYSTEMROOT']
+     if sys.platform == 'win32':
+@@ -157,7 +157,7 @@ def test_path_priority(tmpdir):
+     witness_b_src = '#!%s\n%s\n' % (sys.executable, 'print("WITNESS B")')
+     write_executable(witness_b, witness_b_src)
 
-@@ -136,5 +139,8 @@
+-    env = {'PATH':  str(b)}
-     witness_b.write('#!%s\n%s\n' % (sys.executable, 'print("WITNESS B")'))
++    env = {'PATH':  str(b), 'PYTHONPATH': os.environ['PYTHONPATH']}
-     witness_b.chmod(0o700)
+     if 'SYSTEMROOT' in os.environ:  # Windows http://bugs.python.org/issue20614
- 
+         env[str('SYSTEMROOT')] = os.environ['SYSTEMROOT']
--    out = check_output([sys.executable, str(jupyter), 'witness'], env={'PATH': str(b)})
+     if sys.platform == 'win32':
-+    out = check_output(
-+        [sys.executable, str(jupyter), 'witness'],
-+        env={'PATH': str(b), 'PYTHONPATH': os.environ['PYTHONPATH']}
-+    )
-     assert b'WITNESS A' in out

pkgs/development/python-modules/keras/default.nix

@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "Keras";
-  version = "2.1.1";
+  version = "2.1.2";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f0ca2458c60d9711edf4291230b31795307ad3781cb6232ff4792b53c8f55123";
+    sha256 = "3ee56fc129d9d00b1916046e50056047836f97ada59df029e5661fb34442d5e8";
   };
 
   checkInputs = [

pkgs/development/python-modules/keyring/default.nix

@@ -6,11 +6,11 @@
 buildPythonPackage rec {
   name = "${pname}-${version}";
   pname = "keyring";
-  version = "10.4.0";
+  version = "10.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "09iv50c14mdmdk7sjd6bb47yg7347gymh6r8c0q4gfnzs173y6lh";
+    sha256 = "f10674bb6ecbf82e2b713627c48ad0e84178e1c9d3dc1f0373261a0765402fb2";
   };
 
   buildInputs = [

pkgs/development/python-modules/ldap/default.nix

@@ -1,18 +1,18 @@
 { lib, writeText, buildPythonPackage, isPy3k, fetchPypi
-, openldap, cyrus_sasl, openssl, pytest }:
+, openldap, cyrus_sasl, openssl, pytest, pyasn1 }:
 
 buildPythonPackage rec {
   pname = "python-ldap";
-  version = "2.4.45";
+  version = "2.5.2";
   name = "${pname}-${version}";
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "824fde180a53772e23edc031c4dd64ac1af4a3eade78f00d9d510937d562f64e";
+    sha256 = "b8c134dfedaef0e6ff4a4b94277708dcadb758b448905a83b8946df077356ed2";
   };
 
-  buildInputs = [ pytest ];
+  checkInputs = [ pytest pyasn1 ];
 
   checkPhase = ''
     # Needed by tests to setup a mockup ldap server.

pkgs/development/python-modules/ldap3/default.nix

@@ -1,13 +1,12 @@
 { stdenv, fetchPypi, buildPythonPackage, gssapi, pyasn1 }:
 
 buildPythonPackage rec {
-  version = "2.3";
+  version = "2.4";
   pname = "ldap3";
-  name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1b36lwil4iflk2ay8gi663abpnfm8id7qg4n3jkmmqbnc1sv6mn0";
+    sha256 = "888015f849eb33852583bbaf382f61593b03491cdac6098fd5d4d0252e0e7e66";
   };
 
   buildInputs = [ gssapi ];

pkgs/development/python-modules/libusb1/default.nix

@@ -12,7 +12,7 @@ buildPythonPackage rec {
   postPatch = lib.optionalString stdenv.isLinux ''
     substituteInPlace usb1/libusb1.py --replace \
       "ctypes.util.find_library(base_name)" \
-      "'${libusb1}/lib/libusb${stdenv.hostPlatform.extensions.sharedLibrary}'"
+      "'${libusb1}/lib/libusb-1.0${stdenv.hostPlatform.extensions.sharedLibrary}'"
   '';
 
   buildInputs = [ libusb1 ];

pkgs/development/python-modules/line_profiler/default.nix

@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "line_profiler";
-  version = "2.0";
+  version = "2.1.2";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "739f8ad0e4bcd0cb82e99afc09e00a0351234f6b3f0b1f7f0090a8a2fbbf8381";
+    sha256 = "efa66e9e3045aa7cb1dd4bf0106e07dec9f80bc781a993fbaf8162a36c20af5c";
   };
 
   buildInputs = [ cython ];

pkgs/development/python-modules/llfuse/default.nix

@@ -4,12 +4,12 @@
 
 buildPythonPackage rec {
   pname = "llfuse";
-  version = "1.0";
+  version = "1.3.2";
   name = pname + "-" + version;
 
   src = fetchurl {
     url = "mirror://pypi/l/llfuse/${name}.tar.bz2";
-    sha256 = "1li7q04ljrvwharw4fblcbfhvk6s0l3lnv8yqb4c22lcgbkiqlps";
+    sha256 = "96252a286a2be25810904d969b330ef2a57c2b9c18c5b503bbfbae40feb2bb63";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/development/python-modules/llvmlite/default.nix

@@ -1,5 +1,5 @@
 { stdenv
-, fetchurl
+, fetchPypi
 , buildPythonPackage
 , python
 , llvm
@@ -10,21 +10,20 @@
 
 buildPythonPackage rec {
   pname = "llvmlite";
-  name = "${pname}-${version}";
+  version = "0.21.0";
-  version = "0.20.0";
 
   disabled = isPyPy;
 
-  src = fetchurl {
+  src = fetchPypi {
-    url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.tar.gz";
+    inherit pname version;
-    sha256 = "b2f174848df16bb9195a07fec102110a06d018da736bd9b3570a54d44c797c29";
+    sha256 = "3a5dd0695fdfb9fd47464cd71791b84935bf9642e11f4811d57aa1f2da8cdaa8";
   };
 
   propagatedBuildInputs = [ llvm ] ++ stdenv.lib.optional (pythonOlder "3.4") enum34;
 
   # Disable static linking
   # https://github.com/numba/llvmlite/issues/93
-  patchPhase = ''
+  postPatch = ''
     substituteInPlace ffi/Makefile.linux --replace "-static-libstdc++" ""
 
     substituteInPlace llvmlite/tests/test_binding.py --replace "test_linux" "nope"

pkgs/development/python-modules/lxml/default.nix

@@ -0,0 +1,27 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, libxml2
+, libxslt
+}:
+
+buildPythonPackage rec {
+  pname = "lxml";
+  version = "4.1.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "940caef1ec7c78e0c34b0f6b94fe42d0f2022915ffc78643d28538a5cfd0f40e";
+  };
+
+  buildInputs = [ libxml2 libxslt ];
+
+  hardeningDisable = stdenv.lib.optional stdenv.isDarwin "format";
+
+  meta = {
+    description = "Pythonic binding for the libxml2 and libxslt libraries";
+    homepage = http://lxml.de;
+    license = stdenv.lib.licenses.bsd3;
+    maintainers = with stdenv.lib.maintainers; [ sjourdois ];
+  };
+}

pkgs/development/python-modules/marionette-harness/default.nix

@@ -14,13 +14,13 @@
 
 buildPythonPackage rec {
   pname = "marionette-harness";
-  version = "4.1.0";
+  version = "4.3.0";
   name = "${pname}-${version}";
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "20c188791e28d586c58acf86ff28cb704c4195a4da6eb10db7b8c6771e3f2983";
+    sha256 = "a98bb65a0c63f60d9e3d7ef21dabc9c29676917dc2ec0d46851a3ed694c820cc";
   };
 
   propagatedBuildInputs = [ mozprofile mozversion browsermob-proxy moztest 

pkgs/development/python-modules/markdown/default.nix

@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, nose
+, pyyaml
+}:
+
+buildPythonPackage rec {
+  pname = "Markdown";
+  version = "2.6.10";
+
+  src = fetchPypi {
+    extension = "zip";
+    inherit pname version;
+    sha256 = "cfa536d1ee8984007fcecc5a38a493ff05c174cb74cb2341dafd175e6bc30851";
+  };
+
+  # error: invalid command 'test'
+#   doCheck = false;
+
+  checkInputs = [ nose pyyaml ];
+
+  meta = {
+    description = "A Python implementation of John Gruber’s Markdown with Extension support";
+    homepage = https://github.com/Python-Markdown/markdown;
+    license = lib.licenses.bsd3;
+  };
+}

pkgs/development/python-modules/marshmallow/default.nix

@@ -5,7 +5,7 @@
 buildPythonPackage rec {
   pname = "marshmallow";
   name = "${pname}-${version}";
-  version = "2.14.0";
+  version = "2.15.0";
 
   meta = {
     homepage = "https://github.com/marshmallow-code/marshmallow";
@@ -18,7 +18,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "09943a460026b9a61c3f4cedd0e5ccfed7cfce3271debd19e3f97df561088718";
+    sha256 = "d3f31fe7be2106b1d783cbd0765ef4e1c6615505514695f33082805f929dd584";
   };
 
   propagatedBuildInputs = [ dateutil simplejson ];

pkgs/development/python-modules/matplotlib/default.nix

@@ -20,13 +20,13 @@ assert enableTk -> (tcl != null)
 assert enableQt -> pyqt4 != null;
 
 buildPythonPackage rec {
-  version = "2.1.0";
+  version = "2.1.1";
   pname = "matplotlib";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/m/matplotlib/${name}.tar.gz";
-    sha256 = "4b5f16c9cefde553ea79975305dcaa67c8e13d927b6e55aa14b4a8d867e25387";
+    sha256 = "659f5e1aa0e0f01488c61eff47560c43b8be511c6a29293d7f3896ae17bd8b23";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";

pkgs/development/python-modules/mistune/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "mistune";
-  version = "0.7.4";
+  version = "0.8.3";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0byj9jg9ly7karf5sb1aqcw7avaim9sxl8ws7yw7p1fibjgsy5w5";
+    sha256 = "bc10c33bfdcaa4e749b779f62f60d6e12f8215c46a292d05e486b869ae306619";
   };
 
   buildInputs = [ nose ];

pkgs/development/python-modules/moto/default.nix

@@ -1,17 +1,20 @@
-{ stdenv, buildPythonPackage, fetchPypi, jinja2, werkzeug, flask, requests, pytz
+{ stdenv, buildPythonPackage, fetchPypi, jinja2, werkzeug, flask
-, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil }:
+, requests, pytz, backports_tempfile, cookies, jsondiff, botocore, aws-xray-sdk, docker
+, six, boto, httpretty, xmltodict, nose, sure, boto3, freezegun, dateutil, mock, pyaml }:
 
 buildPythonPackage rec {
   pname = "moto";
-  version = "0.4.31";
+  version = "1.1.25";
-  name    = "moto-${version}";
+
   src = fetchPypi {
     inherit pname version;
-    sha256 = "19s8hfz4mzzzdksa0ddlvrga5mxdaqahk89p5l29a5id8127shr8";
+    sha256 = "d427d6e1a81e926c2b6a071453807b05f4736d65068493e1f3055ac7ee24ea21";
   };
 
   propagatedBuildInputs = [
+    aws-xray-sdk
     boto
+    boto3
     dateutil
     flask
     httpretty
@@ -21,6 +24,13 @@ buildPythonPackage rec {
     requests
     six
     xmltodict
+    mock
+    pyaml
+    backports_tempfile
+    cookies
+    jsondiff
+    botocore
+    docker
   ];
 
   checkInputs = [ boto3 nose sure freezegun ];

pkgs/development/python-modules/nbxmpp/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "nbxmpp";
-  version = "0.6.0";
+  version = "0.6.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0x495yb0abkdspyziw7dyyjwxx6ivnv5zznk92wa3mcind5s9757";
+    sha256 = "10bfb12b083a7509779298c31b4b61e2ed7e78d1960cbcfb3de8d38f3b830991";
   };
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/nilearn/default.nix

@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "nilearn";
-  version = "0.3.1";
+  version = "0.4.0";
   name = pname + "-" + version;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0kkarh5cdcd2czs0bf0s1g51qas84mfxfq0dzd7k5h5l0qr4zy06";
+    sha256 = "bb692254bde35d7e1d3d1534d9b3117810b35a744724625f150fbbc64d519c02";
   };
 
   checkPhase = "nosetests --exclude with_expand_user nilearn/tests";

pkgs/development/python-modules/notebook/default.nix

@@ -22,12 +22,12 @@
 
 buildPythonPackage rec {
   pname = "notebook";
-  version = "5.2.1";
+  version = "5.2.2";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "4ae5b81dd39b37cdd99dcffe83a5182c849947b92d46ac4d2b5093af2bb9f224";
+    sha256 = "7bb54fb61b9c5426bc116f840541b973431198e00ea2896122d05fc122dbbd67";
   };
 
   LC_ALL = "en_US.utf8";

pkgs/development/python-modules/numba/default.nix

@@ -1,5 +1,5 @@
 { stdenv
-, fetchurl
+, fetchPypi
 , python
 , buildPythonPackage
 , isPy27
@@ -14,13 +14,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.35.0";
+  version = "0.36.2";
   pname = "numba";
-  name = "${pname}-${version}";
 
-  src = fetchurl {
+  src = fetchPypi {
-    url = "mirror://pypi/n/numba/${name}.tar.gz";
+    inherit pname version;
-    sha256 = "11564937757605bee590c5758c73cfe9fd6d569726b56d970316a6228971ecc3";
+    sha256 = "d61597808ce511e81b64e32da664f52beb7d947bf834dde8b8b60b29d205e5c2";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";
@@ -29,7 +28,7 @@ buildPythonPackage rec {
 
   # Copy test script into $out and run the test suite.
   checkPhase = ''
-    python -m numba.runtests
+    ${python.interpreter} -m numba.runtests
   '';
   # ImportError: cannot import name '_typeconv'
   doCheck = false;

pkgs/development/python-modules/odfpy/default.nix

@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "odfpy";
-  version = "1.3.5";
+  version = "1.3.6";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6f8163f8464868cff9421a058f25566e41d73c8f7e849c021b86630941b44366";
+    sha256 = "6bcaf3b23aa9e49ed8c8c177266539b211add4e02402748a994451482a10cb1b";
   };
 
   checkPhase = ''

pkgs/development/python-modules/path.py/default.nix

@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "path.py";
-  version = "10.4";
+  version = "10.5";
   name = pname + "-" + version;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c63c75777c8a01f7b273c0065a8ea1e3ba0c9b369fa4a2601831e412b2c4881a";
+    sha256 = "63a7af08676668fd51750f111affbd38c1a13c61aba15c6665b16681771c79a8";
   };
 
   checkInputs = [ pytest pytestrunner ];

pkgs/development/python-modules/pathlib2/default.nix

@@ -5,19 +5,20 @@
 , pythonOlder
 , scandir
 , glibcLocales
+, mock
 }:
 
 if !(pythonOlder "3.4") then null else buildPythonPackage rec {
   pname = "pathlib2";
-  version = "2.2.1";
+  version = "2.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ce9007df617ef6b7bd8a31cd2089ed0c1fed1f7c23cf2bf1ba140b3dd563175d";
+    sha256 = "d32550b75a818b289bd4c1f96b60c89957811da205afcceab75bc8b4857ea5b3";
   };
 
   propagatedBuildInputs = [ six ] ++ lib.optional (pythonOlder "3.5") scandir;
-  checkInputs = [ glibcLocales ];
+  checkInputs = [ glibcLocales ] ++ lib.optional (pythonOlder "3.3") mock;
 
   preCheck = ''
     export LC_ALL="en_US.UTF-8"

pkgs/development/python-modules/pexpect/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "pexpect";
-  version = "4.3.0";
+  version = "4.3.1";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1nfjmz81gsixv22dywidakm7pff3ly1i4yly950bfp8gz1r0iaq0";
+    sha256 = "8e287b171dbaf249d0b06b5f2e88cb7e694651d2d0b8c15bccb83170d3c55575";
   };
 
   # Wants to run pythonin a subprocess

pkgs/development/python-modules/phonenumbers/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.8.6";
+  version = "8.8.8";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ab1fa853350dde91be672192b427169b29e3348c236e46ad7a757e4ac8163c8c";
+    sha256 = "ff2f492e49c212bb7185954efe09e68583a67daec586c02c49bc728c343d4eb0";
   };
 
   meta = {

pkgs/development/python-modules/pip-tools/default.nix

@@ -3,12 +3,12 @@
 
 buildPythonPackage rec {
   pname = "pip-tools";
-  version = "1.10.2";
+  version = "1.11.0";
   name = pname + "-" + version;
 
   src = fetchurl {
     url = "mirror://pypi/p/pip-tools/${name}.tar.gz";
-    sha256 = "d381c7249eb48350cc49447cc106df3d90e9e806b13caaede602c1cd38f61b37";
+    sha256 = "ba427b68443466c389e3b0b0ef55f537ab39344190ea980dfebb333d0e6a50a3";
   };
 
   LC_ALL = "en_US.UTF-8";
@@ -21,9 +21,11 @@ buildPythonPackage rec {
     "test_generate_hashes_all_platforms"
     "test_generate_hashes_without_interfering_with_each_other"
     "test_realistic_complex_sub_dependencies"
+    "test_generate_hashes_with_editable"
     # Expect specific version of "six":
     "test_editable_package"
     "test_input_file_without_extension"
+    "test_locally_available_editable_package_is_not_archived_in_cache_dir"
   ];
 
   checkPhase = ''

pkgs/development/python-modules/plotly/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "plotly";
-  version = "2.1.0";
+  version = "2.2.3";
   name = "${pname}-${version}";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ff6899dc11907b1efb944f79f9583b2e30ba2964bb009145f3580bf30b4d9ee4";
+    sha256 = "dadd2263f1c0449b248fd3742a077d9594935921a9597529be76d6a841237ab0";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pluggy/default.nix

@@ -0,0 +1,29 @@
+{ buildPythonPackage
+, lib
+, fetchPypi
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "pluggy";
+  version = "0.6.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "7f8ae7f5bdf75671a718d2daf0a64b7885f74510bcd98b1a0bb420eb9a9d0cff";
+  };
+
+  checkPhase = ''
+    py.test
+  '';
+
+  # To prevent infinite recursion with pytest
+  doCheck = false;
+
+  meta = {
+    description = "Plugin and hook calling mechanisms for Python";
+    homepage = "https://pypi.python.org/pypi/pluggy";
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ jgeerds ];
+  };
+}

pkgs/development/python-modules/plumbum/default.nix

@@ -6,7 +6,7 @@
 
 buildPythonPackage rec {
   pname = "plumbum";
-  version = "1.6.3";
+  version = "1.6.5";
   name = "${pname}-${version}";
 
   checkInputs = [ pytest ];
@@ -16,6 +16,6 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0249e708459f1b05627a7ca8787622c234e4db495a532acbbd1f1f17f28c7320";
+    sha256 = "d8abb059bb62beb6c99db08d3598167abaeeab53eaf218f91e74bae471a24bee";
   };
 }