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Merge master into staging-next

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This commit is contained in:
github-actions[bot]
2021-05-08 00:46:50 +00:00
committed by GitHub
parent 4756e8716d 088da8735f
commit b4416b52c5
101 changed files with 7603 additions and 6456 deletions
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pkgs/development/python-modules/adafruit-platformdetect/default.nix
+2 -2
View File
@@ -6,12 +6,12 @@
buildPythonPackage rec {
pname = "adafruit-platformdetect";
version = "3.8.0";
version = "3.10.0";
src = fetchPypi {
pname = "Adafruit-PlatformDetect";
inherit version;
sha256 = "sha256-AjUpxdY/5IoWMBtufP3OVnMpUwpxgpCNWoydH1w+t+Y=";
sha256 = "sha256-lIyDYt6OsBOPq1ytD4B4JxX7JeSGWprH2kqqFMzZcGY=";
};
nativeBuildInputs = [ setuptools-scm ];
pkgs/development/python-modules/aiomysql/default.nix
+9
View File
@@ -4,6 +4,7 @@
, pymysql
, pytest
, isPy27
, fetchpatch
}:
buildPythonPackage rec {
@@ -18,6 +19,14 @@ buildPythonPackage rec {
sha256 = "1qvy3phbsxp55161dnppjfx2m1kn82v0irc3xzqw0adfd81vaiad";
};
patches = [
(fetchpatch {
# vendor functions previously provided by pymysql.util
url = "https://github.com/aio-libs/aiomysql/pull/554/commits/919b997a9de7f53d721af76762fba425e306531e.patch";
sha256 = "V1VYyqr6RwTXoVoGVyMuJst6uqTuuHbpMOpLoVZO1XA=";
})
];
propagatedBuildInputs = [
pymysql
];
pkgs/development/python-modules/atlassian-python-api/default.nix
+10 -12
View File
@@ -1,30 +1,28 @@
{ lib
, buildPythonPackage
, fetchPypi
, isPy3k
, certifi
, chardet
, fetchFromGitHub
, deprecated
, idna
, oauthlib
, requests
, requests_oauthlib
, six
, urllib3
, pytestrunner
, pytest
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "atlassian-python-api";
version = "3.8.0";
src = fetchPypi {
inherit pname version;
sha256 = "7ef384a91a790c807336e2bd6b7554284691aadd6d7413d199baf752dd84c53e";
src = fetchFromGitHub {
owner = "atlassian-api";
repo = pname;
rev = version;
sha256 = "sha256-J0/CtfBtOdWReKQS/VvOL/3r+j4zJfnv/ICIXepKUvc=";
};
checkInputs = [ pytestrunner pytest ];
checkInputs = [
pytestCheckHook
];
propagatedBuildInputs = [ deprecated oauthlib requests requests_oauthlib six ];
pkgs/development/python-modules/cvxpy/default.nix
+1 -1
View File
@@ -9,7 +9,7 @@
, osqp
, scipy
, scs
, useOpenmp ? true
, useOpenmp ? (!stdenv.isDarwin)
# Check inputs
, pytestCheckHook
}:
pkgs/development/python-modules/cxxfilt/default.nix
+5 -2
View File
@@ -1,4 +1,5 @@
{ lib
, stdenv
, buildPythonPackage
, fetchPypi
, gcc-unwrapped
@@ -12,9 +13,11 @@ buildPythonPackage rec {
sha256 = "ef6810e76d16c95c11b96371e2d8eefd1d270ec03f9bcd07590e8dcc2c69e92b";
};
postPatch = ''
postPatch = let
libstdcpp = "${lib.getLib gcc-unwrapped}/lib/libstdc++${stdenv.hostPlatform.extensions.sharedLibrary}";
in ''
substituteInPlace cxxfilt/__init__.py \
--replace "find_any_library('stdc++', 'c++')" '"${lib.getLib gcc-unwrapped}/lib/libstdc++.so"'
--replace "find_any_library('stdc++', 'c++')" '"${libstdcpp}"'
'';
# no tests
pkgs/development/python-modules/fritzconnection/default.nix
+2 -2
View File
@@ -2,14 +2,14 @@
buildPythonPackage rec {
pname = "fritzconnection";
version = "1.4.2";
version = "1.5.0";
# no tests on PyPI
src = fetchFromGitHub {
owner = "kbr";
repo = pname;
rev = version;
sha256 = "02w1hwbfwbh5xlq433myzv6ms7jqxg8kn3d6znq4ic22zprzf5r2";
sha256 = "sha256-Iw7R+39rpoCTrRD74kBihF7AMcJWxy2xdPhKLznWdlo=";
};
disabled = pythonOlder "3.6";
pkgs/development/python-modules/jq/default.nix
+6 -3
View File
@@ -2,14 +2,17 @@
buildPythonPackage rec {
pname = "jq";
version = "1.1.2";
version = "1.1.3";
src = fetchPypi {
inherit pname version;
sha256 = "77e747c6ad10ce65479f5f9064ab036483bf307bf71fdd7d6235ef895fcc506e";
sha256 = "1ryxcll7601ki9rwlnryhhxpmwwnxs2qxq7kjm2b0xcqgzx1vv7r";
};
patches = [ ./jq-py-setup.patch ];
patches = [
# Removes vendoring
./jq-py-setup.patch
];
buildInputs = [ jq ];
pkgs/development/python-modules/jq/jq-py-setup.patch
+15 -18
View File
@@ -1,17 +1,17 @@
From 968ddf2bd773e800e46737fced743bd00af9aa0d Mon Sep 17 00:00:00 2001
From: William Kral <william.kral@gmail.com>
Date: Tue, 8 Sep 2020 22:04:24 -0700
Subject: [PATCH] Vastly simplify setup.py for distro compatibility
From bef841b73ba7c9a79211146798ac888fce9bb55a Mon Sep 17 00:00:00 2001
From: "Robert T. McGibbon" <rmcgibbo@gmail.com>
Date: Fri, 7 May 2021 19:14:20 -0400
Subject: [PATCH 1/1] Vastly simplify setup.py for distro compatibility
---
setup.py | 101 ++-----------------------------------------------------
1 file changed, 2 insertions(+), 99 deletions(-)
setup.py | 98 +-------------------------------------------------------
1 file changed, 1 insertion(+), 97 deletions(-)
diff --git a/setup.py b/setup.py
index cb63f60..87380ed 100644
index 663792c..3ebcabe 100644
--- a/setup.py
+++ b/setup.py
@@ -1,114 +1,19 @@
@@ -1,113 +1,19 @@
#!/usr/bin/env python
import os
@@ -79,8 +79,7 @@ index cb63f60..87380ed 100644
- tarball_path=jq_lib_tarball_path,
- lib_dir=jq_lib_dir,
- commands=[
- ["autoreconf", "-i"],
- ["./configure", "CFLAGS=-fPIC", "--disable-maintainer-mode", "--with-oniguruma=" + oniguruma_lib_install_dir],
- ["./configure", "CFLAGS=-fPIC -pthread", "--disable-maintainer-mode", "--with-oniguruma=" + oniguruma_lib_install_dir],
- ["make"],
- ])
-
@@ -93,7 +92,7 @@ index cb63f60..87380ed 100644
-
- macosx_deployment_target = sysconfig.get_config_var("MACOSX_DEPLOYMENT_TARGET")
- if macosx_deployment_target:
- os.environ['MACOSX_DEPLOYMENT_TARGET'] = macosx_deployment_target
- os.environ['MACOSX_DEPLOYMENT_TARGET'] = str(macosx_deployment_target)
-
- def run_command(args):
- print("Executing: %s" % ' '.join(args))
@@ -127,21 +126,19 @@ index cb63f60..87380ed 100644
)
setup(
@@ -120,8 +25,7 @@ setup(
url='http://github.com/mwilliamson/jq.py',
@@ -120,7 +26,6 @@ setup(
python_requires='>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*',
license='BSD 2-Clause',
- ext_modules = [jq_extension],
ext_modules = [jq_extension],
- cmdclass={"build_ext": jq_build_ext},
+ ext_modules=[jq_extension],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
@@ -137,4 +41,3 @@ setup(
'Programming Language :: Python :: 3.8',
@@ -137,4 +42,3 @@ setup(
'Programming Language :: Python :: 3.9',
],
)
-
--
2.28.0
2.29.3
pkgs/development/python-modules/kmapper/default.nix
+2 -6
View File
@@ -5,7 +5,7 @@
, numpy
, scipy
, jinja2
, pytest
, pytestCheckHook
, networkx
, matplotlib
, python-igraph
@@ -32,7 +32,7 @@ buildPythonPackage rec {
];
checkInputs = [
pytest
pytestCheckHook
networkx
matplotlib
python-igraph
@@ -40,10 +40,6 @@ buildPythonPackage rec {
ipywidgets
];
checkPhase = ''
pytest test --ignore test/test_drawing.py
'';
meta = with lib; {
description = "Python implementation of Mapper algorithm for Topological Data Analysis";
homepage = "https://kepler-mapper.scikit-tda.org/";
pkgs/development/python-modules/monty/default.nix
+23 -16
View File
@@ -1,22 +1,20 @@
{ lib
, buildPythonPackage
, fetchFromGitHub
, isPy27
, pythonOlder
, msgpack
, nose
, numpy
, six
, ruamel_yaml
, msgpack
, coverage
, coveralls
, pydantic
, pymongo
, lsof
, ruamel_yaml
, tqdm
}:
buildPythonPackage rec {
pname = "monty";
version = "2021.3.3";
disabled = isPy27; # uses type annotations
disabled = pythonOlder "3.5"; # uses type annotations
# No tests in Pypi
src = fetchFromGitHub {
@@ -26,21 +24,30 @@ buildPythonPackage rec {
sha256 = "1nbv0ys0fv70rgzskkk8gsfr9dsmm7ykim5wv36li840zsj83b1l";
};
checkInputs = [ lsof nose numpy msgpack coverage coveralls pymongo];
propagatedBuildInputs = [ six ruamel_yaml ];
propagatedBuildInputs = [
ruamel_yaml
tqdm
msgpack
];
# test suite tries to decode bytes, but msgpack now returns a str
# https://github.com/materialsvirtuallab/monty/pull/121
postPatch = ''
substituteInPlace tests/test_serialization.py \
--replace ".decode('utf-8')" ""
'';
checkInputs = [
nose
numpy
pydantic
pymongo
];
preCheck = ''
substituteInPlace tests/test_os.py \
--replace 'self.assertEqual("/usr/bin/find", which("/usr/bin/find"))' '#'
'';
checkPhase = ''
runHook preCheck
nosetests -v
runHook postCheck
'';
meta = with lib; {
description = "Serves as a complement to the Python standard library by providing a suite of tools to solve many common problems";
longDescription = "
pkgs/development/python-modules/nmigen/default.nix
+3 -2
View File
@@ -3,11 +3,12 @@
, pythonOlder
, fetchFromGitHub
, setuptools
, setuptools_scm
, setuptools-scm
, pyvcd
, jinja2
, importlib-resources
, importlib-metadata
, git
# for tests
, pytestCheckHook
@@ -30,7 +31,7 @@ buildPythonPackage rec {
sha256 = "0cjs9wgmxa76xqmjhsw4fsb2mhgvd85jgs2mrjxqp6fwp8rlgnl1";
};
nativeBuildInputs = [ setuptools_scm ];
nativeBuildInputs = [ setuptools-scm git ];
propagatedBuildInputs = [
setuptools
pkgs/development/python-modules/pip-tools/default.nix
+21 -30
View File
@@ -1,45 +1,36 @@
{ lib, fetchPypi, buildPythonPackage, pip, pytest, click, six
, setuptools_scm, git, glibcLocales, mock }:
{ lib
, fetchPypi
, pythonOlder
, buildPythonPackage
, pip
, pytest
, pytest-xdist
, click
, setuptools-scm
, git
, glibcLocales
, mock
, pep517
}:
buildPythonPackage rec {
pname = "pip-tools";
version = "6.0.1";
version = "6.1.0";
disabled = pythonOlder "3.6";
src = fetchPypi {
inherit pname version;
sha256 = "3b0c7b95e8d3dfb011bb42cb38f356fcf5d0630480462b59c4d0a112b8d90281";
sha256 = "sha256-QAv3finMpIwxq8IQBCkyu1LcwTjvTqTVLF20KaqK5u4=";
};
LC_ALL = "en_US.UTF-8";
checkInputs = [ pytest git glibcLocales mock ];
propagatedBuildInputs = [ pip click six setuptools_scm ];
disabledTests = lib.concatMapStringsSep " and " (s: "not " + s) [
# Depend on network tests:
"test_allow_unsafe_option" #paramaterized, but all fail
"test_annotate_option" #paramaterized, but all fail
"test_editable_package_vcs"
"test_editable_top_level_deps_preserved" # can't figure out how to select only one parameter to ignore
"test_filter_pip_markers"
"test_filter_pip_markes"
"test_generate_hashes_all_platforms"
"test_generate_hashes_verbose"
"test_generate_hashes_with_editable"
"test_generate_hashes_with_url"
"test_generate_hashes_without_interfering_with_each_other"
"test_get_file_hash_without_interfering_with_each_other"
"test_get_hashes_local_repository_cache_miss"
"test_realistic_complex_sub_dependencies"
"test_stdin"
"test_upgrade_packages_option"
"test_url_package"
"test_editable_package"
"test_locally_available_editable_package_is_not_archived_in_cache_dir"
];
checkInputs = [ pytest git glibcLocales mock pytest-xdist ];
propagatedBuildInputs = [ pip click setuptools-scm pep517 ];
checkPhase = ''
export HOME=$(mktemp -d) VIRTUAL_ENV=1
py.test -k "${disabledTests}"
py.test -m "not network"
'';
meta = with lib; {
pkgs/development/python-modules/pushbullet/default.nix
+18 -8
View File
@@ -1,6 +1,12 @@
{ lib, buildPythonPackage, fetchPypi
, requests, websocket_client, python_magic
, pytest, mock }:
{ lib
, buildPythonPackage
, fetchPypi
, requests
, websocket_client
, python_magic
, cryptography
, pytestCheckHook
}:
buildPythonPackage rec {
pname = "pushbullet.py";
@@ -11,13 +17,17 @@ buildPythonPackage rec {
sha256 = "917883e1af4a0c979ce46076b391e0243eb8fe0a81c086544bcfa10f53e5ae64";
};
propagatedBuildInputs = [ requests websocket_client python_magic ];
propagatedBuildInputs = [ cryptography requests websocket_client python_magic ];
checkInputs = [ pytest mock ];
checkPhase = ''
PUSHBULLET_API_KEY="" py.test -k "not test_e2e and not test_auth"
preCheck = ''
export PUSHBULLET_API_KEY=""
'';
checkInputs = [ pytestCheckHook ];
disabledTests = [
"test_auth_fail"
"test_auth_success"
"test_decryption"
];
meta = with lib; {
description = "A simple python client for pushbullet.com";
pkgs/development/python-modules/pyvex/default.nix
+1
View File
@@ -28,6 +28,7 @@ buildPythonPackage rec {
preBuild = ''
export CC=${stdenv.cc.targetPrefix}cc
substituteInPlace pyvex_c/Makefile --replace 'AR=ar' 'AR=${stdenv.cc.targetPrefix}ar'
'';
# No tests are available on PyPI, GitHub release has tests
pkgs/development/python-modules/pyxnat/default.nix
+6 -1
View File
@@ -5,6 +5,7 @@
, nose
, lxml
, requests
, six
}:
buildPythonPackage rec {
@@ -17,7 +18,11 @@ buildPythonPackage rec {
sha256 = "22524120d744b50d25ef6bfc7052637e4ead9e2afac92563231ec89848f5adf5";
};
propagatedBuildInputs = [ lxml requests ];
propagatedBuildInputs = [
lxml
requests
six
];
# future is not used, and pathlib is installed part of python38+
# w/o an external package
pkgs/development/python-modules/rfc3339-validator/default.nix
+10
View File
@@ -1,5 +1,6 @@
{ lib
, buildPythonPackage
, fetchpatch
, fetchPypi
, pytestCheckHook
, hypothesis
@@ -17,6 +18,15 @@ buildPythonPackage rec {
sha256 = "7a578aa0740e9ee2b48356fe1f347139190c4c72e27f303b3617054efd15df32";
};
patches = [
# Fixes test failure on darwin. Filed upstream: https://github.com/naimetti/rfc3339-validator/pull/3.
# Not yet merged.
(fetchpatch {
url = "https://github.com/rmcgibbo/rfc3339-validator/commit/4b6bb62c30bd158d3b4663690dcba1084ac31770.patch";
sha256 = "0h9k82hhmp2xfzn49n3i47ws3rpm9lvfs2rjrds7hgx5blivpwl6";
})
];
propagatedBuildInputs = [ six ];
checkInputs = [ pytestCheckHook hypothesis strict-rfc3339 ];
pkgs/development/python-modules/rich/default.nix
+14 -8
View File
@@ -6,7 +6,7 @@
, colorama
, dataclasses
, ipywidgets
, poetry
, poetry-core
, pygments
, typing-extensions
, pytestCheckHook
@@ -14,27 +14,33 @@
buildPythonPackage rec {
pname = "rich";
version = "9.13.0";
version = "10.1.0";
format = "pyproject";
disabled = pythonOlder "3.6";
# tests not included in pypi tarball
src = fetchFromGitHub {
owner = "willmcgugan";
repo = pname;
rev = "v${version}";
sha256 = "0si3rzhg8wfxw4aakkp8sr6nbzfa54rl0w92macd1338q90ha4ly";
sha256 = "sha256-HH+k9uiK34yoqu83rknCIe2DpoqJRHkcqABuj8zjzqs=";
};
format = "pyproject";
nativeBuildInputs = [ poetry ];
nativeBuildInputs = [ poetry-core ];
propagatedBuildInputs = [
CommonMark
colorama
ipywidgets
pygments
typing-extensions
] ++ lib.optional (pythonOlder "3.7") dataclasses;
] ++ lib.optional (pythonOlder "3.7") [
dataclasses
];
checkInputs = [
pytestCheckHook
];
checkInputs = [ pytestCheckHook ];
pythonImportsCheck = [ "rich" ];
meta = with lib; {
pkgs/development/python-modules/runway-python/default.nix
+39 -11
View File
@@ -1,33 +1,43 @@
{ lib
, buildPythonPackage
, fetchPypi
, pythonAtLeast
, fetchFromGitHub
, colorcet
, cryptography
, flask
, flask-compress
, flask-cors
, flask-sockets
, gevent
, imageio
, numpy
, scipy
, pillow
, gevent
, wget
, pyopenssl
, scipy
, six
, colorcet
, unidecode
, urllib3
, wget
, deepdiff
, pytestCheckHook
, pytestcov
, websocket_client
}:
buildPythonPackage rec {
pname = "runway-python";
version = "0.6.1";
src = fetchPypi {
inherit pname version;
sha256 = "66cf1517dd817bf6db3792608920274f964dd0ced8dabecd925b8bc17aa95740";
src = fetchFromGitHub {
owner = "runwayml";
repo = "model-sdk";
rev = version;
sha256 = "1ww2wai1qnly8i7g42vhkkbs4yp7wi9x4fjdxsg9fl3izjra0zs2";
};
propagatedBuildInputs = [
colorcet
cryptography
flask
flask-compress
flask-cors
@@ -36,6 +46,7 @@ buildPythonPackage rec {
imageio
numpy
pillow
pyopenssl
scipy
six
unidecode
@@ -43,13 +54,30 @@ buildPythonPackage rec {
wget
];
# tests are not packaged in the released tarball
doCheck = false;
pythonImportsCheck = [
"runway"
];
checkInputs = [
deepdiff
pytestCheckHook
pytestcov
websocket_client
];
disabledTests = [
# these tests require network
"test_file_deserialization_remote"
"test_file_deserialization_absolute_directory"
"test_file_deserialization_remote_directory"
] ++ lib.optionals (pythonAtLeast "3.9") [
# AttributeError: module 'base64' has no attribute 'decodestring
# https://github.com/runwayml/model-sdk/issues/99
"test_image_serialize_and_deserialize"
"test_segmentation_serialize_and_deserialize_colormap"
"test_segmentation_serialize_and_deserialize_labelmap"
];
meta = {
description = "Helper library for creating Runway models";
homepage = "https://github.com/runwayml/model-sdk";
pkgs/development/python-modules/seabreeze/default.nix
+33 -8
View File
@@ -1,8 +1,17 @@
{ lib
, fetchFromGitHub
, buildPythonPackage
, pyusb
, cython
, git
, pkgconfig
, pytest-runner
, setuptools-scm
, future
, numpy
, pyusb
, mock
, pytestCheckHook
, zipp
}:
## Usage
@@ -18,19 +27,35 @@ buildPythonPackage rec {
owner = "ap--";
repo = "python-seabreeze";
rev = "v${version}";
sha256 = "1lna3w1vsci35dhyi7qjvbb99gxvzk23k195c7by7kkrps844q1j";
sha256 = "1hm9aalpb9sdp8s7ckn75xvyiacp5678pv9maybm5nz0z2h29ibq";
leaveDotGit = true;
};
nativeBuildInputs = [
cython
git
pkgconfig
pytest-runner
setuptools-scm
];
propagatedBuildInputs = [
future
numpy
pyusb
];
postInstall = ''
mkdir -p $out/etc/udev/rules.d
cp misc/10-oceanoptics.rules $out/etc/udev/rules.d/10-oceanoptics.rules
cp os_support/10-oceanoptics.rules $out/etc/udev/rules.d/10-oceanoptics.rules
'';
# underlying c libraries are tested and fail
# (c libs are used with anaconda, which we don't care about as we use the alternative path, being that of pyusb).
doCheck = false;
propagatedBuildInputs = [ pyusb numpy ];
# few backends enabled, but still some tests
checkInputs = [
pytestCheckHook
mock
zipp
];
setupPyBuildFlags = [ "--without-cseabreeze" ];
pkgs/development/python-modules/simple-salesforce/default.nix
+7 -10
View File
@@ -1,10 +1,8 @@
{ lib
, fetchFromGitHub
, buildPythonPackage
, authlib
, requests
, pyopenssl
, cryptography
, idna
, mock
, isPy27
, nose
@@ -24,21 +22,20 @@ buildPythonPackage rec {
};
propagatedBuildInputs = [
authlib
requests
pyopenssl
cryptography
idna
];
checkInputs = [
nose
pytz
responses
] ++ lib.optionals isPy27 [ mock ];
];
postPatch = ''
substituteInPlace setup.py \
--replace "mock==1.0.1" "mock"
checkPhase = ''
runHook preCheck
nosetests -v
runHook postCheck
'';
meta = with lib; {
pkgs/development/python-modules/sphinx-autobuild/default.nix
+7 -1
View File
@@ -1,6 +1,7 @@
{ lib
, buildPythonPackage
, fetchPypi
, colorama
, sphinx
, livereload
}:
@@ -14,10 +15,15 @@ buildPythonPackage rec {
sha256 = "de1ca3b66e271d2b5b5140c35034c89e47f263f2cd5db302c9217065f7443f05";
};
propagatedBuildInputs = [ sphinx livereload ];
propagatedBuildInputs = [
colorama
sphinx
livereload
];
# No tests included.
doCheck = false;
pythonImportsCheck = [ "sphinx_autobuild" ];
meta = with lib; {
pkgs/development/python-modules/spidev/default.nix
+1
View File
@@ -19,6 +19,7 @@ buildPythonPackage rec {
description = "Python bindings for Linux SPI access through spidev";
license = licenses.mit;
maintainers = with maintainers; [ hexa ];
platforms = platforms.linux;
};
}
pkgs/development/python-modules/surepy/default.nix
+2 -7
View File
@@ -17,7 +17,7 @@
buildPythonPackage rec {
pname = "surepy";
version = "0.5.0";
version = "0.6.0";
format = "pyproject";
disabled = pythonOlder "3.8";
@@ -25,7 +25,7 @@ buildPythonPackage rec {
owner = "benleb";
repo = pname;
rev = "v${version}";
sha256 = "1adsnjya142bxdhfxqsi2qa35ylvdcibigs1wafjlxazlxs3mg0j";
sha256 = "sha256-XoYiZPBc9SybyKocui1HqSA+YPiPpbupJWMCfmQT5RU=";
};
nativeBuildInputs = [ poetry-core ];
@@ -43,11 +43,6 @@ buildPythonPackage rec {
rich
];
postPatch = ''
# halo is out-dated, https://github.com/benleb/surepy/pull/7
substituteInPlace pyproject.toml --replace "^0.0.30" "^0.0.31"
'';
# Project has no tests
doCheck = false;
pythonImportsCheck = [ "surepy" ];