R: improve support for CRAN and Bioconductor package sets

- Update the instructions for re-generating each of the package set files.
 - Provide test-evaluation.nix expression to verify that the package sets evaluates.
 - Update list of known broken packages.
This commit is contained in:
Peter Simons
2015-06-17 23:19:56 +02:00
parent 93a742fd28
commit bb42c215e2
6 changed files with 4661 additions and 4235 deletions
+9 -9
View File
@@ -293,15 +293,15 @@ rec {
# The commented-out ones don't seem to allow direct package downloads;
# they serve error messages that result in hash mismatches instead.
bioc = [
# http://bioc.ism.ac.jp/3.0/bioc/
# http://bioc.openanalytics.eu/3.0/bioc/
# http://bioconductor.fmrp.usp.br/3.0/bioc/
# http://mirror.aarnet.edu.au/pub/bioconductor/3.0/bioc/
# http://watson.nci.nih.gov/bioc_mirror/3.0/bioc/
http://bioconductor.jp/packages/3.0/bioc/
http://bioconductor.statistik.tu-dortmund.de/packages/3.0/bioc/
http://mirrors.ebi.ac.uk/bioconductor/packages/3.0/bioc/
http://mirrors.ustc.edu.cn/bioc/3.0/bioc/
# http://bioc.ism.ac.jp/3.2/bioc/
# http://bioc.openanalytics.eu/3.2/bioc/
# http://bioconductor.fmrp.usp.br/3.2/bioc/
# http://mirror.aarnet.edu.au/pub/bioconductor/3.2/bioc/
# http://watson.nci.nih.gov/bioc_mirror/3.2/bioc/
http://bioconductor.jp/packages/3.2/bioc/
http://bioconductor.statistik.tu-dortmund.de/packages/3.2/bioc/
http://mirrors.ebi.ac.uk/bioconductor/packages/3.2/bioc/
http://mirrors.ustc.edu.cn/bioc/3.2/bioc/
];
# CRAN mirrors (from http://cran.r-project.org/mirrors.html)