Merge branch 'master' into staging-next

pkgs/development/python-modules/breezy/default.nix

@@ -0,0 +1,41 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, configobj
+, six
+, fastimport
+, dulwich
+, launchpadlib
+, testtools
+}:
+
+buildPythonPackage rec {
+  pname = "breezy";
+  version = "3.0.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "50f16bc7faf299f98fe58573da55b0664078f94b1a0e7f0ce9e1e6a0d47e68e0";
+  };
+
+  propagatedBuildInputs = [ configobj six fastimport dulwich launchpadlib ];
+
+  checkInputs = [ testtools ];
+
+  # There is a conflict with their `lazy_import` and plugin tests
+  doCheck = false;
+
+  # symlink for bazaar compatibility
+  postInstall = ''
+    ln -s "$out/bin/brz" "$out/bin/bzr"
+  '';
+
+  pythonImportsCheck = [ "breezy" ];
+
+  meta = with lib; {
+    description = "Friendly distributed version control system";
+    homepage = "https://www.breezy-vcs.org/";
+    license = licenses.gpl2;
+    maintainers = [ maintainers.marsam ];
+  };
+}

pkgs/development/python-modules/ignite/default.nix

@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytest
+, mock
+, pytorch
+, pynvml
+, scikitlearn
+, tqdm
+}:
+
+buildPythonPackage rec {
+  pname = "ignite";
+  version = "0.2.1";
+
+  src = fetchFromGitHub {
+    owner = "pytorch";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "15k6dd11yxn4923llcpmw4srl1by5ljhh7aw5pnkn4n4qpywh6cm";
+  };
+
+  checkInputs = [ pytest mock ];
+
+  checkPhase = ''
+    pytest -k 'not visdom and not tensorboard and not mlflow and not polyaxon' tests/
+  '';
+  # these packages are not currently in nixpkgs
+
+  propagatedBuildInputs = [ pytorch scikitlearn tqdm pynvml ];
+
+  meta = with lib; {
+    description = "High-level training library for PyTorch";
+    homepage = https://pytorch.org/ignite;
+    license = licenses.bsd3;
+    maintainers = [ maintainers.bcdarwin ];
+  };
+}

pkgs/development/python-modules/launchpadlib/default.nix

@@ -0,0 +1,47 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+, httplib2
+, keyring
+, lazr-restfulclient
+, lazr-uri
+, setuptools
+, six
+, testresources
+, wadllib
+}:
+
+buildPythonPackage rec {
+  pname = "launchpadlib";
+  version = "1.10.10";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "740580d72611452804ad7735c9af6944ed4a14fc1a2fcbcddba3fc719b5317f3";
+  };
+
+  propagatedBuildInputs = [
+    httplib2
+    keyring
+    lazr-restfulclient
+    lazr-uri
+    setuptools
+    six
+    testresources
+    wadllib
+  ];
+
+  preCheck = ''
+    export HOME=$TMPDIR
+  '';
+
+  doCheck = isPy3k;
+
+  meta = with lib; {
+    description = "Script Launchpad through its web services interfaces. Officially supported";
+    homepage = "https://help.launchpad.net/API/launchpadlib";
+    license = licenses.lgpl3;
+    maintainers = [ maintainers.marsam ];
+  };
+}

pkgs/development/python-modules/lazr-restfulclient/default.nix

@@ -0,0 +1,36 @@
+{ lib
+, buildPythonPackage
+, isPy27
+, fetchPypi
+, distro
+, httplib2
+, oauthlib
+, setuptools
+, six
+, wadllib
+}:
+
+buildPythonPackage rec {
+  pname = "lazr.restfulclient";
+  version = "0.14.3";
+
+  disabled = isPy27; # namespace is broken for python2
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "9f28bbb7c00374159376bd4ce36b4dacde7c6b86a0af625aa5e3ae214651a690";
+  };
+
+  propagatedBuildInputs = [ distro httplib2 oauthlib setuptools six wadllib ];
+
+  doCheck = false; # requires to package lazr.restful, lazr.authentication, and wsgi_intercept
+
+  pythonImportsCheck = [ "lazr.restfulclient" ];
+
+  meta = with lib; {
+    description = "A programmable client library that takes advantage of the commonalities among";
+    homepage = "https://launchpad.net/lazr.restfulclient";
+    license = licenses.lgpl3;
+    maintainers = [ maintainers.marsam ];
+  };
+}

pkgs/development/python-modules/lazr-uri/default.nix

@@ -0,0 +1,27 @@
+{ lib
+, buildPythonPackage
+, isPy27
+, fetchPypi
+, setuptools
+}:
+
+buildPythonPackage rec {
+  pname = "lazr.uri";
+  version = "1.0.3";
+
+  disabled = isPy27; # namespace is broken for python2
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "5c620b5993c8c6a73084176bfc51de64972b8373620476ed841931a49752dc8b";
+  };
+
+  propagatedBuildInputs = [ setuptools ];
+
+  meta = with lib; {
+    description = "A self-contained, easily reusable library for parsing, manipulating";
+    homepage = "https://launchpad.net/lazr.uri";
+    license = licenses.lgpl3;
+    maintainers = [ maintainers.marsam ];
+  };
+}

pkgs/development/python-modules/nitime/default.nix

@@ -0,0 +1,36 @@
+{ lib
+, buildPythonPackage
+, python
+, fetchPypi
+, pytest
+, cython
+, numpy
+, scipy
+, matplotlib
+, networkx
+, nibabel
+}:
+
+buildPythonPackage rec {
+  pname = "nitime";
+  version = "0.8.1";
+  disabled = python.pythonVersion != "3.7";  # gcc error when running Cython with Python 3.8
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0hb3x5196z2zaawb8s7lhja0vd3n983ncaynqfl9qg315x9ax7i6";
+  };
+
+  checkInputs = [ pytest ];
+  buildInputs = [ cython ];
+  propagatedBuildInputs = [ numpy scipy matplotlib networkx nibabel ];
+
+  checkPhase = "pytest nitime/tests";
+
+  meta = with lib; {
+    homepage = https://nipy.org/nitime;
+    description = "Algorithms and containers for time-series analysis in time and spectral domains";
+    license = licenses.bsd3;
+    maintainers = [ maintainers.bcdarwin ];
+  };
+}

pkgs/development/python-modules/pyarrow/default.nix

@@ -1,4 +1,4 @@
-{ lib, buildPythonPackage, python, isPy3k, arrow-cpp, cmake, cython, futures, hypothesis, numpy, pandas, pytest, pkgconfig, setuptools_scm, six }:
+{ lib, buildPythonPackage, python, isPy3k, arrow-cpp, cmake, cython, futures, hypothesis, numpy, pandas, pytest, pytest-lazy-fixture, pkgconfig, setuptools_scm, six }:
 
 let
   _arrow-cpp = arrow-cpp.override { inherit python; };
@@ -13,7 +13,7 @@ buildPythonPackage rec {
 
   nativeBuildInputs = [ cmake cython pkgconfig setuptools_scm ];
   propagatedBuildInputs = [ numpy six ] ++ lib.optionals (!isPy3k) [ futures ];
-  checkInputs = [ hypothesis pandas pytest ];
+  checkInputs = [ hypothesis pandas pytest pytest-lazy-fixture ];
 
   PYARROW_BUILD_TYPE = "release";
   PYARROW_WITH_PARQUET = true;

pkgs/development/python-modules/pynvml/default.nix

@@ -0,0 +1,29 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pythonOlder
+, cudatoolkit
+}:
+
+buildPythonPackage rec {
+  pname = "pynvml";
+  version = "8.0.4";
+  disabled = pythonOlder "3.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0pfykj1amqh1rixp90rg85v1nj6qmx89fahqr6ii4zlcckffmm68";
+  };
+
+  propagatedBuildInputs = [ cudatoolkit ];
+
+  doCheck = false;  # no tests in PyPi dist
+  pythonImportsCheck = [ "pynvml" "pynvml.smi" ];
+
+  meta = with lib; {
+    description = "Python bindings for the NVIDIA Management Library";
+    homepage = https://www.nvidia.com;
+    license = licenses.bsd3;
+    maintainers = [ maintainers.bcdarwin ];
+  };
+}

pkgs/development/python-modules/pytest-lazy-fixture/default.nix

@@ -0,0 +1,26 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "pytest-lazy-fixture";
+  version = "0.6.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1b0hmnsxw4s2wf9pks8dg6dfy5cx3zcbzs8517lfccxsfizhqz8f";
+  };
+
+  checkInputs = [
+    pytestCheckHook
+  ];
+
+  meta = with lib; {
+    description = "Helps to use fixtures in pytest.mark.parametrize";
+    homepage = "https://github.com/pytest-dev/pytest-repeat";
+    license = licenses.mit;
+    maintainers = with maintainers; [ tobim ];
+  };
+}

pkgs/development/python-modules/wadllib/default.nix

@@ -0,0 +1,28 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy3k
+, setuptools
+, lazr-uri
+}:
+
+buildPythonPackage rec {
+  pname = "wadllib";
+  version = "1.3.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1234cfe81e2cf223e56816f86df3aa18801d1770261865d93337b8b603be366e";
+  };
+
+  propagatedBuildInputs = [ setuptools lazr-uri ];
+
+  doCheck = isPy3k;
+
+  meta = with lib; {
+    description = "Navigate HTTP resources using WADL files as guides";
+    homepage = "https://launchpad.net/wadllib";
+    license = licenses.lgpl3;
+    maintainers = [ maintainers.marsam ];
+  };
+}