Merge branch 'staging-next' into staging

pkgs/development/python-modules/ailment/default.nix

@@ -7,14 +7,14 @@
 
 buildPythonPackage rec {
   pname = "ailment";
-  version = "9.0.6790";
+  version = "9.0.6852";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "angr";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-RcLa18JqQ7c8u+fhyNHmJEXt/Lg73JDAImtUtiaZbTw=";
+    sha256 = "sha256-yIYZubZ8073voe4C78QITP3Pau/mrpNTyhPpU/QftXo=";
   };
 
   propagatedBuildInputs = [ pyvex ];

pkgs/development/python-modules/angr/default.nix

@@ -42,14 +42,14 @@ in
 
 buildPythonPackage rec {
   pname = "angr";
-  version = "9.0.6790";
+  version = "9.0.6852";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = pname;
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-PRghK/BdgxGpPuinkGr+rREza1pQXz2gxnXiSmxBSTc=";
+    sha256 = "sha256-8BN706jqflhKmHVLQ1Y0k3GMScB1Hs5E/zndgq0sXB8=";
   };
 
   propagatedBuildInputs = [
@@ -81,7 +81,9 @@ buildPythonPackage rec {
   # Tests have additional requirements, e.g., pypcode and angr binaries
   # cle is executing the tests with the angr binaries
   doCheck = false;
-  pythonImportsCheck = [ "angr" ];
+
+  # See http://angr.io/api-doc/
+  pythonImportsCheck = [ "angr" "claripy" "cle" "pyvex" "archinfo" ];
 
   meta = with lib; {
     description = "Powerful and user-friendly binary analysis platform";

pkgs/development/python-modules/angrop/default.nix

@@ -8,14 +8,14 @@
 
 buildPythonPackage rec {
   pname = "angrop";
-  version = "9.0.6790";
+  version = "9.0.6852";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "angr";
     repo = pname;
     rev = "v${version}";
-    sha256 = "16r22ajkj8sxbgsym0i85xdjvphgf1566p5s7d915kkj37qdrrpy";
+    sha256 = "sha256-uOf2d3TbTdLobqfdOUSVQ/mqyD3TaYPlPCNFsqcPrXo=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/archinfo/default.nix

@@ -7,13 +7,13 @@
 
 buildPythonPackage rec {
   pname = "archinfo";
-  version = "9.0.6790";
+  version = "9.0.6852";
 
   src = fetchFromGitHub {
     owner = "angr";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-A4WvRElahRv/XmlmS4WexMqm8FIZ1SSUnbdoAWWECMk=";
+    sha256 = "sha256-NlL/uRI568HYkt8T2kuzyHNXpWybOLbFduE+1dzm4Qo=";
   };
 
   checkInputs = [

pkgs/development/python-modules/binwalk/default.nix

@@ -22,13 +22,13 @@
 
 buildPythonPackage rec {
   pname = "binwalk";
-  version = "27";
+  version = "2.3.1";
 
   src = fetchFromGitHub {
     owner = "ReFirmLabs";
     repo = "binwalk";
-    rev = "python${version}";
-    sha256 = "03kqhs3j9czdc2pnr1v8iszwx254ljpvrmmj0j5ls0ssjrfxacyx";
+    rev = "v${version}";
+    sha256 = "108mj4jjffdmaz6wjvglbv44j7fkhspaxz1rj2bi1fcnwsri5wsm";
   };
 
   propagatedBuildInputs = [ zlib xz ncompress gzip bzip2 gnutar p7zip cabextract squashfsTools xz pycrypto ]
@@ -53,5 +53,6 @@ buildPythonPackage rec {
     homepage = "https://github.com/ReFirmLabs/binwalk";
     description = "A tool for searching a given binary image for embedded files";
     maintainers = [ maintainers.koral ];
+    license = licenses.mit;
   };
 }

pkgs/development/python-modules/claripy/default.nix

@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "claripy";
-  version = "9.0.6790";
+  version = "9.0.6852";
   disabled = pythonOlder "3.6";
 
   src = fetchFromGitHub {
     owner = "angr";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-GpWHj3bNgr7nQoIKM4VQtVkbObxqw6QkuEmfmPEiJmE=";
+    sha256 = "sha256-31zaL3PJDXyLvVD3Xdc2qoLSrXipwTawHoj+I+Y6fng=";
   };
 
   # Use upstream z3 implementation

pkgs/development/python-modules/cle/default.nix

@@ -15,7 +15,7 @@
 
 let
   # The binaries are following the argr projects release cycle
-  version = "9.0.6790";
+  version = "9.0.6852";
 
   # Binary files from https://github.com/angr/binaries (only used for testing and only here)
   binaries = fetchFromGitHub {
@@ -35,7 +35,7 @@ buildPythonPackage rec {
     owner = "angr";
     repo = pname;
     rev = "v${version}";
-    sha256 = "sha256-zQggVRdc8fV1ulFnOlzYLvSOSOP3+dY8j+6lo+pXSkM=";
+    sha256 = "sha256-IRyRio3M7YZtdBqb7PGoWs2Lyt8hjBLYM1zQYbhjYEs=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/dask-glm/default.nix

@@ -8,7 +8,6 @@
 , scipy
 , scikitlearn
 , pytest
-, setuptools-scm
 }:
 
 buildPythonPackage rec {

pkgs/development/python-modules/homeconnect/default.nix

@@ -0,0 +1,33 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, requests
+, requests_oauthlib
+}:
+
+buildPythonPackage rec {
+  pname = "homeconnect";
+  version = "0.6.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0n4h4mi23zw3v6fbkz17fa6kkl5v9bfmj0p57jvfzcfww511y9mn";
+  };
+
+  propagatedBuildInputs = [
+    requests
+    requests_oauthlib
+  ];
+
+  # Project has no tests
+  doCheck = false;
+  pythonImportsCheck = [ "homeconnect" ];
+
+  meta = with lib; {
+    description = "Python client for the BSH Home Connect REST API";
+    homepage = "https://github.com/DavidMStraub/homeconnect";
+    changelog = "https://github.com/DavidMStraub/homeconnect/releases/tag/v${version}";
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/panel/default.nix

@@ -15,7 +15,7 @@ let
   node = callPackage ./node {};
 in buildPythonPackage rec {
   pname = "panel";
-  version = "0.11.1";
+  version = "0.11.3";
 
   # Don't forget to also update the node packages
   # 1. retrieve the package.json file
@@ -23,7 +23,7 @@ in buildPythonPackage rec {
   # 3. node2nix
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ce531e5c0c8a8ae74d523762aeb1666650caebbe1867aba16129d29791e921f9";
+    sha256 = "sha256-HpHYHysPE6MRxR0kek5C7sunHMfBsUGdZfxamz2jcLc=";
   };
 
   # Since 0.10.0 panel attempts to fetch from the web.

pkgs/development/python-modules/panel/node/node-packages.nix

@@ -4,13 +4,13 @@
 
 let
   sources = {
-    "@bokeh/bokehjs-2.3.0" = {
+    "@bokeh/bokehjs-2.3.1" = {
       name = "_at_bokeh_slash_bokehjs";
       packageName = "@bokeh/bokehjs";
-      version = "2.3.0";
+      version = "2.3.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@bokeh/bokehjs/-/bokehjs-2.3.0.tgz";
-        sha512 = "geKBhYUVJ5IaY0UNk9k2P0yiYLCj+DOeNjdDneuTJ8K5R9fs0Rpp4iiaQKUGr1yUyQHGHLU8sk4CFZ+Bd5ZILg==";
+        url = "https://registry.npmjs.org/@bokeh/bokehjs/-/bokehjs-2.3.1.tgz";
+        sha512 = "DlNZaqAJFUw38IuSk2TUOcfyiK8Ya3kDRpYt/RgVUftIDW2CWLbBo47kbug9+ykEF49rcnlxcCXhNXzpg4V7gw==";
       };
     };
     "@bokeh/numbro-1.6.2" = {
@@ -476,10 +476,10 @@ let
   args = {
     name = "_at_holoviz_slash_panel";
     packageName = "@holoviz/panel";
-    version = "0.11.1";
+    version = "0.11.3";
     src = ./.;
     dependencies = [
-      sources."@bokeh/bokehjs-2.3.0"
+      sources."@bokeh/bokehjs-2.3.1"
       sources."@bokeh/numbro-1.6.2"
       (sources."@bokeh/slickgrid-2.4.2702" // {
         dependencies = [

pkgs/development/python-modules/pycocotools/default.nix

@@ -0,0 +1,37 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, cython
+, matplotlib
+}:
+
+buildPythonPackage rec {
+  pname = "pycocotools";
+  version = "2.0.2";
+  format = "setuptools";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "06hz0iz4kqxhqby4j7bah8l41kg68bb118jawp172i4vg497lw94";
+  };
+
+  propagatedBuildInputs = [
+    cython
+    matplotlib
+  ];
+
+  pythonImportsCheck = [
+    "pycocotools.coco"
+    "pycocotools.cocoeval"
+  ];
+
+  # has no tests
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Official APIs for the MS-COCO dataset";
+    homepage = "https://github.com/cocodataset/cocoapi/tree/master/PythonAPI";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ hexa piegames ];
+  };
+}

pkgs/development/python-modules/pymetno/default.nix

@@ -8,15 +8,15 @@
 }:
 
 buildPythonPackage rec {
-  pname = "PyMetno";
-  version = "0.8.2";
+  pname = "pymetno";
+  version = "0.8.3";
   format = "setuptools";
 
   src = fetchFromGitHub {
-    repo = pname;
     owner = "Danielhiversen";
+    repo = "PyMetno";
     rev = version;
-    sha256 = "0b1zm60yqj1mivc3zqw2qm9rqh8cbmx0r58jyyvm3pxzq5cafdg5";
+    sha256 = "sha256-dvZz+wv9B07yKM4E4fQ9VQOgeil9KxZxcGk6D0kWY4g=";
   };
 
   propagatedBuildInputs = [
@@ -34,7 +34,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with lib; {
-    description = "A library to communicate with the met.no api";
+    description = "A library to communicate with the met.no API";
     homepage = "https://github.com/Danielhiversen/pyMetno/";
     license = licenses.mit;
     maintainers = with maintainers; [ flyfloh ];

pkgs/development/python-modules/pysmartapp/default.nix

@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, httpsig
+, pytest-asyncio
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "pysmartapp";
+  version = "0.3.3";
+
+  src = fetchFromGitHub {
+    owner = "andrewsayre";
+    repo = pname;
+    rev = version;
+    sha256 = "03wk44siqxl15pa46x5vkg4q0mnga34ir7qn897576z2ivbx7awh";
+  };
+
+  propagatedBuildInputs = [
+    httpsig
+  ];
+
+  checkInputs = [
+    pytest-asyncio
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [ "pysmartapp" ];
+
+  meta = with lib; {
+    description = "Python implementation to work with SmartApp lifecycle events";
+    homepage = "https://github.com/andrewsayre/pysmartapp";
+    changelog = "https://github.com/andrewsayre/pysmartapp/releases/tag/${version}";
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/pysmartthings/default.nix

@@ -0,0 +1,38 @@
+{ lib
+, aiohttp
+, buildPythonPackage
+, fetchFromGitHub
+, pytest-asyncio
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "pysmartthings";
+  version = "0.7.6";
+
+  src = fetchFromGitHub {
+    owner = "andrewsayre";
+    repo = pname;
+    rev = version;
+    sha256 = "0m91lfzdbmq6qv6bihd278psi9ghldxpa1d0dsbii2zf338188qj";
+  };
+
+  propagatedBuildInputs = [
+    aiohttp
+  ];
+
+  checkInputs = [
+    pytest-asyncio
+    pytestCheckHook
+  ];
+
+  pythonImportsCheck = [ "pysmartthings" ];
+
+  meta = with lib; {
+    description = "Python library for interacting with the SmartThings cloud API";
+    homepage = "https://github.com/andrewsayre/pysmartthings";
+    changelog = "https://github.com/andrewsayre/pysmartthings/releases/tag/${version}";
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/pyturbojpeg/default.nix

@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "pyturbojpeg";
-  version = "1.4.2";
+  version = "1.4.3";
 
   src = fetchPypi {
     pname = "PyTurboJPEG";
     inherit version;
-    sha256 = "sha256-dWmj/huCkborcShf2BT+L3ybEfgdKVIGiJnkz755xwo=";
+    sha256 = "sha256-Q7KVfR9kA32QPQFWgSSCVB5sNOmSF8y5J4dmBc14jvg=";
   };
 
   patches = [

pkgs/development/python-modules/pyvex/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "pyvex";
-  version = "9.0.6790";
+  version = "9.0.6852";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-bqOLHGlLQ12nYzbv9H9nJ0/Q5APJb/9B82YtHk3IvYQ=";
+    sha256 = "sha256-O84QErqHIRYQZh9mR71opm+j7kb9a4s5f1yj0WNiJAM=";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pyviz-comms/default.nix

@@ -2,15 +2,16 @@
 , fetchPypi
 , lib
 , param
+, panel
 }:
 
 buildPythonPackage rec {
   pname = "pyviz_comms";
-  version = "2.0.1";
+  version = "0.7.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "be63957a49772895ddebeac02c697e1675e0bdf1515824f60fcc261914f23624";
+    sha256 = "sha256-zZZJqeqd/LmzTXj5pk4YcKqLa5TeVG4smca7U9ZKtdE=";
   };
 
   propagatedBuildInputs = [ param ];
@@ -18,6 +19,10 @@ buildPythonPackage rec {
   # there are not tests with the package
   doCheck = false;
 
+  passthru.tests = {
+    inherit panel;
+  };
+
   meta = with lib; {
     description = "Launch jobs, organize the output, and dissect the results";
     homepage = "https://pyviz.org/";

pkgs/development/python-modules/seqeval/default.nix

@@ -0,0 +1,49 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, numpy
+, scikitlearn
+, perl
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "seqeval";
+  version = "1.2.2";
+  format = "setuptools";
+
+  src = fetchFromGitHub {
+    owner = "chakki-works";
+    repo = "seqeval";
+    rev = "v${version}";
+    sha256 = "0qv05gn54kc4wpmwnflmfqw4gwwb8lxqhkiihl0pvl7s2i7qzx2j";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "use_scm_version=True," "version='${version}'," \
+      --replace "setup_requires=['setuptools_scm']," "setup_requires=[],"
+  '';
+
+  propagatedBuildInputs = [
+    numpy
+    scikitlearn
+  ];
+
+  checkInputs = [
+    pytestCheckHook
+  ];
+
+  disabledTests = [
+    # tests call perl script and get stuck in there
+    "test_statistical_tests"
+    "test_by_ground_truth"
+  ];
+
+  meta = with lib; {
+    description = "A Python framework for sequence labeling evaluation";
+    homepage = "https://github.com/chakki-works/seqeval";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/development/python-modules/smhi-pkg/default.nix

@@ -0,0 +1,47 @@
+{ lib
+, aiohttp
+, buildPythonPackage
+, fetchFromGitHub
+, pytest-asyncio
+, pytestCheckHook
+}:
+
+buildPythonPackage rec {
+  pname = "smhi-pkg";
+  version = "1.0.14";
+
+  src = fetchFromGitHub {
+    owner = "joysoftware";
+    repo = "pypi_smhi";
+    rev = version;
+    sha256 = "186xwrg3hvr0hszq2kxvygd241q2sp11gfk6mwj9z4zqywwfcbn3";
+  };
+
+  propagatedBuildInputs = [
+    aiohttp
+  ];
+
+  checkInputs = [
+    pytest-asyncio
+    pytestCheckHook
+  ];
+
+  disabledTests = [
+    # Disable tests that needs network access
+    "test_smhi_integration_test"
+    "test_smhi_async_integration_test"
+    "test_smhi_async_integration_test_use_session"
+    "test_smhi_async_get_forecast_integration2"
+    "test_async_error_from_api"
+  ];
+
+  pythonImportsCheck = [ "smhi" ];
+
+  meta = with lib; {
+    description = "Python library for accessing SMHI open forecast data";
+    homepage = "https://github.com/joysoftware/pypi_smhi";
+    changelog = "https://github.com/joysoftware/pypi_smhi/releases/tag/${version}";
+    license = with licenses; [ mit ];
+    maintainers = with maintainers; [ fab ];
+  };
+}

pkgs/development/python-modules/survey/default.nix

@@ -1,16 +1,19 @@
 { lib
 , buildPythonPackage
+, pythonOlder
 , fetchPypi
 , wrapio
 }:
 
 buildPythonPackage rec {
   pname = "survey";
-  version = "3.4.2";
+  version = "3.4.3";
+
+  disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "sha256-aF7ZS5oxeIOb7mJsrusdc3HefcPE+3OTXcJB/pjJxFY=";
+    sha256 = "sha256-TK89quY3bpNIEz1n3Ecew4FnTH6QgeSLdDNV86gq7+I=";
   };
 
   propagatedBuildInputs = [