ocamlPackages: irmin 2.2.0 → 2.4.0; git: 2.13 → 3.2.0; and related changes (#110184)

* ocamlPackages.index: 1.2.1 -> 1.3.0

* ocamlPackages.decompress: 0.9.0 -> 1.2.0

* ocamlPackages.imagelib-unix: remove at 20191011

* ocamlPackages.imagelib: 20191011 -> 20200929

* ocamlPackages.duff: 0.2 -> 0.3

* ocamlPackages.carton{,-git,-lwt}: init at 0.2.0

* ocamlPackages.encore: 0.5 → 0.7

* ocamlPackages.git-http: remove at 2.1.3

* ocamlPackages.git-unix: move into git directory

* ocamlPackages.irmin-mem: remove at 2.2.0

Replaced by irmin.mem contained in ocamlPackages.irmin >= 2.4.0

* ocamlPackages.git*: 2.1.3 -> 3.2.0

ocamlPackages.git-unix: 2.1.3 -> 3.2.0

ocamlPackages.git-cohttp{,-unix,-mirage}: init at 3.2.0

* ocamlPackages.irmin*: 2.2.0 -> 2.4.0

ocamlPackages.irmin-containers: init at 2.4.0
ocamlPackages.irmin-layers: init at 2.4.0
ocamlPackages.irmin-mirage: init at 2.4.0
ocamlPackages.irmin-mirage-git: init at 2.4.0
ocamlPackages.irmin-mirage-graphql: init at 2.4.0

* ocamlPackages.wodan-irmin: mark as broken

pkgs/development/ocaml-modules/irmin/default.nix

@@ -1,6 +1,6 @@
-{ lib, fetchurl, buildDunePackage
+{ lib, buildDunePackage
 , astring, base64, digestif, fmt, jsonm, logs, ocaml_lwt, ocamlgraph, uri
-, alcotest, hex, ppx_irmin
+, repr, ppx_irmin, bheap
 }:
 
 buildDunePackage {
@@ -11,10 +11,23 @@ buildDunePackage {
   useDune2 = true;
   minimumOCamlVersion = "4.07";
 
-  propagatedBuildInputs = [ astring base64 digestif fmt jsonm logs ocaml_lwt ocamlgraph uri ];
+  propagatedBuildInputs = [
+    astring
+    base64
+    digestif
+    fmt
+    jsonm
+    logs
+    ocaml_lwt
+    ocamlgraph
+    uri
+    repr
+    bheap
+    ppx_irmin
+  ];
 
-  checkInputs = [ alcotest hex ppx_irmin ];
-  doCheck = true;
+  # circular dependency on irmin-mem
+  doCheck = false;
 
   meta = ppx_irmin.meta // {
     description = "A distributed database built on the same principles as Git";