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bioconductor: 3.4 -> 3.6

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Justin Bedo
2018-02-21 09:58:17 +11:00
parent 5bede1a252
commit cfc07bcf0e
8 changed files with 4046 additions and 3674 deletions
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pkgs/development/r-modules/generate-r-packages.R
+5 -5
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@@ -3,12 +3,12 @@ library(data.table)
library(parallel)
cl <- makeCluster(10)
rVersion <- paste(R.Version()$major, strsplit(R.Version()$minor, ".", fixed=TRUE)[[1]][1], sep=".")
biocVersion <- 3.6
snapshotDate <- Sys.Date()-1
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/experiment/src/contrib/")
mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")
, "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/annotation/src/contrib/")
, "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/experiment/src/contrib/")
, cran=paste0("http://mran.revolutionanalytics.com/snapshot/", snapshotDate, "/src/contrib/")
)
@@ -81,7 +81,7 @@ cat("{ self, derive }:\n")
cat("let derive2 = derive ")
if (mirrorType == "cran") { cat("{ snapshot = \"", paste(snapshotDate), "\"; }", sep="")
} else if (mirrorType == "irkernel") { cat("{}")
} else { cat("{ rVersion = \"", rVersion, "\"; }", sep="") }
} else { cat("{ biocVersion = \"", biocVersion, "\"; }", sep="") }
cat(";\n")
cat("in with self; {\n")
cat(paste(nix, collapse="\n"), "\n", sep="")