Merge remote-tracking branch 'origin/stdenv-updates' into illumos

Conflicts:
	pkgs/development/libraries/gmp/5.1.1.nix
	pkgs/development/libraries/mpc/default.nix
	pkgs/development/libraries/mpfr/default.nix
	pkgs/development/libraries/ppl/default.nix
	pkgs/tools/misc/coreutils/default.nix

pkgs/applications/version-management/git-and-tools/default.nix

@@ -43,13 +43,16 @@ rec {
   });
 
   gitAnnex = lib.makeOverridable (import ./git-annex) {
-    inherit stdenv fetchurl perl coreutils git libuuid rsync findutils curl ikiwiki which openssh;
-    inherit (haskellPackages) ghc bloomfilter dataenc editDistance hinotify hS3 hslogger HTTP
-      blazeBuilder blazeHtml caseInsensitive IfElse json liftedBase MissingH monadControl mtl
-      network pcreLight SHA stm utf8String networkInfo dbus clientsession cryptoApi dataDefault
-      extensibleExceptions filepath hamlet httpTypes networkMulticast text time transformers
-      transformersBase wai waiLogger warp yesod yesodDefault yesodStatic testpack QuickCheck
-      SafeSemaphore networkProtocolXmpp async dns DAV uuid Glob;
+    inherit stdenv fetchurl perl which ikiwiki curl bup git gnupg1 lsof openssh rsync;
+    inherit (haskellPackages) ghc aeson async blazeBuilder bloomfilter
+      caseInsensitive clientsession cryptoApi dataDefault dataenc DAV dbus dns
+      editDistance extensibleExceptions filepath gnutls hamlet hinotify hS3
+      hslogger httpConduit httpTypes HUnit IfElse json liftedBase MissingH
+      monadControl mtl network networkInfo networkMulticast networkProtocolXmpp
+      QuickCheck random regexCompat SafeSemaphore SHA stm text time
+      transformers transformersBase utf8String uuid wai waiLogger warp
+      xmlConduit xmlTypes yesod yesodDefault yesodForm yesodStatic testpack
+      cabalInstall;
   };
 
   qgit = import ./qgit {

pkgs/applications/version-management/git-and-tools/git-annex/default.nix

@@ -1,49 +1,50 @@
-{ stdenv, ghc, fetchurl, perl, coreutils, git, libuuid, rsync
-, findutils, curl, ikiwiki, which, openssh
-, blazeBuilder, blazeHtml, bloomfilter, caseInsensitive
-, clientsession, cryptoApi, dataDefault, dataenc, dbus
-, editDistance, extensibleExceptions, filepath, hamlet, hinotify
-, hS3, hslogger, HTTP, httpTypes, IfElse, json, liftedBase
-, MissingH, monadControl, mtl, network, networkInfo
-, networkMulticast, pcreLight, QuickCheck, SHA, stm, text, time
-, transformers, transformersBase, utf8String, wai, waiLogger, warp
-, yesod, yesodDefault, yesodStatic, testpack, SafeSemaphore
-, networkProtocolXmpp, async, dns, DAV, uuid, Glob
+{ stdenv, fetchurl, perl, which, ikiwiki, ghc, aeson, async, blazeBuilder
+, bloomfilter, bup, caseInsensitive, clientsession, cryptoApi, curl, dataDefault
+, dataenc, DAV, dbus, dns, editDistance, extensibleExceptions, filepath, git
+, gnupg1, gnutls, hamlet, hinotify, hS3, hslogger, httpConduit, httpTypes, HUnit
+, IfElse, json, liftedBase, lsof, MissingH, monadControl, mtl, network
+, networkInfo, networkMulticast, networkProtocolXmpp, openssh, QuickCheck
+, random, regexCompat, rsync, SafeSemaphore, SHA, stm, text, time, transformers
+, transformersBase, utf8String, uuid, wai, waiLogger, warp, xmlConduit, xmlTypes
+, yesod, yesodDefault, yesodForm, yesodStatic, testpack
+, cabalInstall		# TODO: remove this build input at the next update
 }:
 
 let
-  version = "3.20130216";
+  version = "4.20130227";
 in
 stdenv.mkDerivation {
   name = "git-annex-${version}";
 
   src = fetchurl {
     url = "http://git.kitenet.net/?p=git-annex.git;a=snapshot;sf=tgz;h=${version}";
-    sha256 = "1zbxkv9kkfyr8haml0wih1fi2xi6qazwzcxjyv8q65fa80ksskbr";
+    sha256 = "1zw5kzb08zz43ahbhrazjpq9zn73l3kwnqilp464frf7fg7rwan6";
     name = "git-annex-${version}.tar.gz";
   };
 
-  buildInputs = [ ghc git libuuid rsync findutils curl ikiwiki which
-    openssh blazeBuilder blazeHtml bloomfilter caseInsensitive
-    clientsession cryptoApi dataDefault dataenc dbus editDistance
-    extensibleExceptions filepath hamlet hinotify hS3 hslogger HTTP
-    httpTypes IfElse json liftedBase MissingH monadControl mtl network
-    networkInfo networkMulticast pcreLight QuickCheck SHA stm text time
-    transformers transformersBase utf8String wai waiLogger warp yesod
-    yesodDefault yesodStatic testpack SafeSemaphore networkProtocolXmpp
-    async dns DAV uuid Glob ];
+  buildInputs = [ ghc aeson async blazeBuilder bloomfilter bup ikiwiki
+    caseInsensitive clientsession cryptoApi curl dataDefault dataenc DAV dbus
+    dns editDistance extensibleExceptions filepath git gnupg1 gnutls hamlet
+    hinotify hS3 hslogger httpConduit httpTypes HUnit IfElse json liftedBase
+    lsof MissingH monadControl mtl network networkInfo networkMulticast
+    networkProtocolXmpp openssh QuickCheck random regexCompat rsync
+    SafeSemaphore SHA stm text time transformers transformersBase utf8String
+    uuid wai waiLogger warp xmlConduit xmlTypes yesod yesodDefault yesodForm
+    yesodStatic which perl testpack cabalInstall ];
 
-  checkTarget = "test";
-  doCheck = true;
-
-  preConfigure = ''
+  configurePhase = ''
     makeFlagsArray=( PREFIX=$out )
-    sed -i -e 's|#!/usr/bin/perl|#!${perl}/bin/perl|' Build/mdwn2man
-    sed -i -e 's|"cp |"${coreutils}/bin/cp |' -e 's|"rm -f |"${coreutils}/bin/rm -f |' test.hs
-    # Remove this patch after the next update!
-    sed -i -e '9i #define WITH_OLD_URI' Utility/Url.hs
+    patchShebangs .
+
+    # cabal-install wants to store stuff in $HOME
+    mkdir ../tmp
+    export HOME=$PWD/../tmp
+
+    cabal configure -f-fast -ftestsuite -f-android -fproduction -fdns -fxmpp -fpairing -fwebapp -fassistant -fdbus -finotify -fwebdav -fs3
   '';
 
+  checkPhase = "./git-annex test";
+
   meta = {
     homepage = "http://git-annex.branchable.com/";
     description = "Manage files with git without checking them into git";

pkgs/applications/version-management/git-and-tools/git/default.nix

@@ -31,6 +31,9 @@ stdenv.mkDerivation {
          docbook_xsl docbook_xml_dtd_45 libxslt ]
     ++ stdenv.lib.optionals guiSupport [tcl tk];
 
+  # required to support pthread_cancel()
+  NIX_LDFLAGS = stdenv.lib.optionalString (!stdenv.isDarwin) "-lgcc_s";
+
   makeFlags = "prefix=\${out} PERL_PATH=${perl}/bin/perl SHELL_PATH=${stdenv.shell} "
       + (if pythonSupport then "PYTHON_PATH=${python}/bin/python" else "NO_PYTHON=1")
       + (if stdenv.isSunOS then " INSTALL=install NO_INET_NTOP= NO_INET_PTON=" else "");

pkgs/applications/version-management/git-and-tools/github-backup/default.nix

@@ -0,0 +1,25 @@
+{ cabal, fetchurl, extensibleExceptions, filepath, github, hslogger, IfElse
+, MissingH, mtl, network, prettyShow
+}:
+
+cabal.mkDerivation (self: {
+  pname = "github-backup";
+  version = "1.20120314";
+  src = fetchurl {
+    url = "https://github.com/joeyh/github-backup/archive/1.20120314.tar.gz";
+    sha256 = "0rmgkylsnxbry02g5bxq5af03azgydfz6dzyvqzbhnkwavhqdlqy";
+    name = "github-backup-${self.pname}.tar.gz";
+  };
+  isLibrary = false;
+  isExecutable = true;
+  buildDepends = [
+    extensibleExceptions filepath github hslogger IfElse MissingH mtl
+    network prettyShow
+  ];
+  meta = {
+    homepage = "https://github.com/joeyh/github-backup";
+    description = "backs up everything github knows about a repository, to the repository";
+    license = "GPL";
+    platforms = self.ghc.meta.platforms;
+  };
+})