treewide: use runtimeShell instead of stdenv.shell whenever possible

Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.

pkgs/development/tools/misc/ccls/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, makeWrapper
-, cmake, llvmPackages, rapidjson }:
+, cmake, llvmPackages, rapidjson, runtimeShell }:
 
 stdenv.mkDerivation rec {
   name    = "ccls-${version}";
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
 
   cmakeFlags = [ "-DSYSTEM_CLANG=ON" ];
 
-  shell = stdenv.shell;
+  shell = runtimeShell;
   postFixup = ''
     # We need to tell ccls where to find the standard library headers.
 

pkgs/development/tools/misc/cquery/default.nix

@@ -1,5 +1,6 @@
 { fetchFromGitHub, makeWrapper
-, cmake, llvmPackages, ncurses }:
+, cmake, llvmPackages, ncurses
+, runtimeShell }:
 
 let
   src = fetchFromGitHub {
@@ -28,7 +29,7 @@ stdenv.mkDerivation rec {
     "-DCMAKE_OSX_DEPLOYMENT_TARGET=10.12"
   ];
 
-  shell = stdenv.shell;
+  shell = runtimeShell;
   postFixup = ''
     # We need to tell cquery where to find the standard library headers.
 

pkgs/development/tools/misc/ctags/wrapped.nix

@@ -14,7 +14,7 @@ with pkgs.stdenv.lib;
 
   # the derivation. use language extensions specified by args
   ctagsWrapped = makeOverridable ( {args, name} :  pkgs.writeScriptBin name ''
-  #!${stdenv.shell}
+  #!${pkgs.runtimeShell}
   exec ${pkgs.ctags}/bin/ctags ${concatStringsSep " " (map escapeShellArg args)} "$@"
   '') {
     args = let x = pkgs.ctagsWrapped; in concatLists [

pkgs/development/tools/misc/distcc/default.nix

@@ -1,5 +1,6 @@
 { stdenv, fetchFromGitHub, popt, avahi, pkgconfig, python, gtk2, runCommand
 , gcc, autoconf, automake, which, procps, libiberty_static
+, runtimeShell
 , sysconfDir ? ""   # set this parameter to override the default value $out/etc
 , static ? false
 }:
@@ -53,7 +54,7 @@ let
           mkdir -p $out/bin
           if [ -x "${gcc.cc}/bin/gcc" ]; then
             cat > $out/bin/gcc << EOF
-            #!${stdenv.shell}
+            #!${runtimeShell}
             ${extraConfig}
             exec ${distcc}/bin/distcc gcc "\$@"
           EOF
@@ -61,7 +62,7 @@ let
           fi
           if [ -x "${gcc.cc}/bin/g++" ]; then
             cat > $out/bin/g++ << EOF
-            #!${stdenv.shell}
+            #!${runtimeShell}
             ${extraConfig}
             exec ${distcc}/bin/distcc g++ "\$@"
           EOF

pkgs/development/tools/misc/opengrok/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, jre, ctags, makeWrapper, coreutils, git }:
+{ stdenv, fetchurl, jre, ctags, makeWrapper, coreutils, git, runtimeShell }:
 
 stdenv.mkDerivation rec {
   name = "opengrok-${version}";
@@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
     mkdir -p $out
     cp -a * $out/
     substituteInPlace $out/bin/OpenGrok --replace "/bin/uname" "${coreutils}/bin/uname"
-    substituteInPlace $out/bin/Messages --replace "#!/bin/ksh" "#!${stdenv.shell}"
+    substituteInPlace $out/bin/Messages --replace "#!/bin/ksh" "#!${runtimeShell}"
     wrapProgram $out/bin/OpenGrok \
       --prefix PATH : "${stdenv.lib.makeBinPath [ ctags git ]}" \
       --set JAVA_HOME "${jre}" \

pkgs/development/tools/misc/saleae-logic/default.nix

@@ -9,7 +9,7 @@
 { stdenv, fetchurl, unzip, glib, libSM, libICE, gtk2, libXext, libXft
 , fontconfig, libXrender, libXfixes, libX11, libXi, libXrandr, libXcursor
 , freetype, libXinerama, libxcb, zlib, pciutils
-, makeDesktopItem, xkeyboardconfig
+, makeDesktopItem, xkeyboardconfig, runtimeShell
 }:
 
 let
@@ -70,7 +70,7 @@ stdenv.mkDerivation rec {
     # Make wrapper script that uses the LD_PRELOAD library
     mkdir -p "$out/bin"
     cat > "$out/bin/saleae-logic" << EOF
-    #!${stdenv.shell}
+    #!${runtimeShell}
     export LD_PRELOAD="$out/lib/preload.so"
     export QT_XKB_CONFIG_ROOT="${xkeyboardconfig}/share/X11/xkb"
     export PATH="${pciutils}/bin:\$PATH"