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Author SHA1 Message Date
Renato Alves 051e4193b6 python37Packages.gtts: Add changelog link 2021-02-08 17:22:38 +01:00
Renato Alves 459c5ec3b1 pythonPackages.pysam: Disable failing tests unrelated to packaging 
These will be fixed upstream and are due to format changes introduced
in samtools and htslib 1.11
 2020-10-30 01:28:00 +01:00
Renato Alves 6e19ed0a52 lumpy: 0.3.0 -> 0.3.1 2020-10-30 01:28:00 +01:00
Renato Alves a28e5b0a4f samtools: 1.10 -> 1.11 2020-10-29 18:27:22 +01:00
Renato Alves 5c931c7299 docs: Add link to the GitHub issue on how to become a committer 2020-10-29 11:32:41 +01:00
Renato Alves 019fa5f608 htslib: 1.10.2 -> 1.11 (#100812) 2020-10-29 11:18:29 +01:00
Renato Alves 0a41e3f938 pythonPackages.pysam: add libdeflate and enable tests 
Some tests still fail due to upstream reasons so we skip those.

Note also that we are not using nix's pytestCheckHook due to
pysam detecting how it's loaded which conflicts with how
pytestCheckHook runs tests. In addition, the selection mode used
by disabledTests causes more tests than the failing ones to be
skipped, which is undesired.
See the discussion in https://github.com/NixOS/nixpkgs/pull/100823
 2020-10-19 22:03:08 -07:00
Renato Alves 068400bdfc tdm: 2.07 -> 2.08 2020-09-06 20:31:59 +02:00
Renato Alves af17bae209 pythonPackages.cherrypy: disable failing test 2020-04-13 12:32:01 +02:00
Renato Alves f5814e2075 mnemosyne: Install mnemosyne.desktop 2020-04-13 12:30:29 +02:00
Renato Alves 4ea30958a8 mnemosyne: Add pyopengl to silence OpenGL warning 2020-04-13 12:30:29 +02:00
Renato Alves f6889aa21e mnemosyne: Fix 'Could not find Qt' segfault 2020-04-13 12:30:27 +02:00
Renato Alves a0a16c7993 mnemosyne: add googletrans and gtts python dependencies 
These python packages interface with Google Translate and their absence
causes mnemosyne to fail at launch.
 2020-03-12 21:39:50 -07:00
Renato Alves 71113dbc69 pythonPackages.gtts: init at 2.1.1 2020-02-29 10:10:37 -08:00
Renato Alves e30abffb66 pythonPackages.googletrans: init at 2.4.0 2020-02-22 10:00:06 -08:00
Renato Alves bf88bf47d1 pysam: 0.15.3 -> 0.15.4 
Also disable tests until upstream test data issues are resolved.
See link in comment in code for more information.
 2020-02-21 10:12:32 +01:00
Renato Alves e18fb092f1 kssd: init at 1.0 2019-12-08 16:48:59 +01:00
Renato Alves bed6814c83 pysam: 0.15.2 -> 0.15.3 2019-10-05 11:00:55 +02:00
Renato Alves 448bed5653 HTSeq: init at 0.11.2 2019-10-04 14:32:19 +02:00
Renato Alves bd95c913b8 docear: init at 1.2.0 
Stable URLs are only provided for older versions.
 2019-05-27 03:53:57 +02:00
Renato Alves 3bcdb3945a ghc-8.2.1-binary: Patch shebang causing failures in Centos 6 2018-11-05 14:05:50 +01:00
Renato Alves 232b2d7bc0 libaosd: init at 0.2.7-9-g177589f 2018-10-21 21:43:54 +02:00
Renato Alves 7cd0cec3f4 freerdp: 2.0.0-rc2 -> 2.0.0-rc3 2018-10-20 16:53:15 +02:00
Renato Alves b2b44c9e9f mailutils: fix path to sendmail for local mail delivery 
Re-apply patch originally introduced in 23da6f9ca4 ("mailutils: fix
for sendmail path"), fixing regression introduced in 27a9ef8709
("mailutils: fix build break").

Fixes #21008.
Closes #38708.

[Bjørn: modify/extend commit message.]
 2018-04-13 20:50:23 +02:00
Renato Alves 154d1d2f19 samtools: 1.6 -> 1.7 2018-02-06 15:38:00 +01:00
Renato Alves b2284e0454 htslib: 1.6 -> 1.7 2018-02-06 15:37:50 +01:00
Renato Alves a6ee80aa18 dendropy: init at 4.3.0 2018-02-06 10:06:12 +01:00
Renato Alves 37680b046c pysam: init at 0.13.0 
A python library to interact with SAM/BAM/CRAM files
 2018-02-06 00:53:32 +01:00
Renato Alves 65ea5f8857 samtools_0_1_19: init at 0.1.19 
samtools-1.5 already exists but some software requires the older version
 2018-02-02 21:49:50 +01:00
Renato Alves 05889c52b9 RAxML: init at 8.2.11 (SSE3 & MPI) 
This can potentially be extended to cover all the other compilation
targets. SSE3-PTHREADS and MPI being the most commonly used.
 2018-02-02 18:31:40 +01:00
Renato Alves b22e4976cb muscle: init at 3.8.31 2018-01-28 12:32:46 +01:00
Renato Alves 43b72ba4c5 Add Renato Alves (unode) to maintainers 2018-01-27 16:41:02 +01:00
Renato Alves 523444db38 luaPackages.luaposix: init at 33.4.0 2017-02-19 01:09:51 +01:00