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Author SHA1 Message Date
Timo Kaufmann 236fdbcb62 Revert "python3Packages.notebook: 5.7.8 -> 6.0.3" 
This reverts commit 62425ee576.

Mistaken update of the pinned python2 version.
 2020-05-08 07:22:16 +02:00
Timo Kaufmann ffa08af5c2 Revert "python3Packages.nbformat: 4.4.0 -> 5.0.4" 
This reverts commit 7ba0848eec.

Mistaken update of the pinned python2 version.
 2020-05-08 07:22:16 +02:00
Timo Kaufmann 1b8ceee71c python2.pkgs.jupyter_client: pin at 5.x 
Version 6.x dropped python2 compatibility.
 2020-05-08 07:22:16 +02:00
Timo Kaufmann 863319fcb6 python.pkgs.ipykernel: 5.1.4 -> 5.2.1 
A newer version is needed to fix the build after the recent
jupyter_client 6.x update in e19e5ac7f0.
 2020-05-08 07:06:08 +02:00
Timo Kaufmann bbb8132790 Merge pull request #80206 from Thra11/guile-gnutls 
gnutls: fix guile bindings
 2020-05-07 18:01:32 +00:00
Timo Kaufmann a12092b621 Merge pull request #87127 from isaacwhanson/fix/vim-beforePlugins 
vim-utils: restore `beforePlugins` option
 2020-05-06 23:04:31 +00:00
Timo Kaufmann 7ae4bd1f99 Merge pull request #86962 from Mic92/rl-coach 
python3.pkgs.rl-coach: mark as broken
 2020-05-05 21:20:38 +00:00
Timo Kaufmann bd6736965a Merge pull request #84662 from michaelpj/update/heatseeker 
heatseeker: fix finding stty
 2020-05-01 22:23:20 +00:00
Timo Kaufmann 7866440f12 Merge pull request #86274 from samlich/sage-matrix-double-dense 
sage: fix doctest matrix_double_dense is_unitary
 2020-05-01 22:12:10 +00:00
Timo Kaufmann 379f7595d2 Merge pull request #79454 from Flakebi/spirv-cross 
spirv-cross: init at 2020-01-16
 2020-04-21 23:44:41 +00:00
Timo Kaufmann 166bf2314a Merge pull request #81210 from B4dM4n/ausweisapp2 
ausweisapp2: init at 1.20.0
 2020-04-20 22:07:40 +00:00
Timo Kaufmann 42ca7c114e Merge pull request #85176 from timokau/zimports-init 
python.pkgs.zimports: init at 0.2.0
 2020-04-17 09:43:12 +00:00
Timo Kaufmann c6ca626b4b Merge pull request #83537 from puzzlewolf/line-awesome 
line-awesome: init at 1.3.0
 2020-04-15 14:19:58 +00:00
Timo Kaufmann c26ee28613 python.pkgs.zimports: init at 0.2.0 
The author gives a pretty good overview of why one would want to use
zimports over other import organizers:

https://github.com/sqlalchemyorg/zimports/tree/0.2.0#zzzeek-why-are-you-writing-one-of-these-there-are-a-dozen-pep8-import-fixers
 2020-04-13 21:27:03 +02:00
Timo Kaufmann 8febf8babe Merge pull request #85027 from timokau/pymc3-unbreak 
python3.pkgs.pymc3: unbreak; update arviz, tensorflow-probability
 2020-04-11 20:43:07 +00:00
Timo Kaufmann b7b33e2c5d python3.pkgs.pymc3: unbreak 
The arviz and packaging dependencies are needed since the update to
pymc3 3.8.
 2020-04-11 22:11:19 +02:00
Timo Kaufmann 346197e57c python.pkgs.arviz: 0.6.1 -> 0.7.0 
Fixes a test failure that was caused by the numba update in
4362401fa3.
 2020-04-11 22:11:17 +02:00
Timo Kaufmann 04d3adb82f python.pkgs.tensorflow-probability: 0.7 -> 0.8.0 
This unbreaks the build by updating to a newer version, adding new
dependencies and backporting some patches.

0.9 is released already, but that version is no longer compatible with
tf1. 0.8.0 is compatible with tf1 and tf2.
 2020-04-11 22:11:16 +02:00
Timo Kaufmann b72fd98789 Merge pull request #84666 from jonringer/repofy-palp 
palp: correct metadata for repology
 2020-04-08 11:44:33 +00:00
Timo Kaufmann 0382ea8302 Merge pull request #81919 from xzfc/cached-nix-shell 
cached-nix-shell: init at 0.1.2
 2020-04-07 16:06:14 +00:00
Timo Kaufmann 5d3f4e9c0b Merge pull request #84457 from vbgl/ocaml-gettext-0.4.1 
ocamlPackages.ocaml_gettext: 0.3.8 → 0.4.1
 2020-04-06 21:52:01 +00:00
Timo Kaufmann ae55e4ec3b Merge pull request #83447 from drewrisinger/dr-pr-python-qiskit-aqua 
python3Packages.qiskit-aqua: init at 0.6.5
 2020-04-06 17:47:31 +00:00
Timo Kaufmann 1af2f11633 Merge pull request #82044 from ivan-timokhin/junicode-1.002 
junicode: update to 1.002 and correct license
 2020-04-06 09:11:13 +00:00
Timo Kaufmann 02b1f2a2de Merge pull request #83224 from shnarazk/cadical-pr 
cadical: init at 1.2.1
 2020-04-04 15:44:04 +00:00
Timo Kaufmann 696274fae7 Merge pull request #83183 from bbigras/zenith 
zenith: init at 0.8.0
 2020-04-04 11:41:02 +00:00
Timo Kaufmann addac63b84 Merge pull request #84095 from timokau/calibre-unbreak-desktop 
calibre: fix build of desktop items
 2020-04-02 11:35:49 +00:00
Timo Kaufmann 3f76ce2011 calibre: fix build of desktop items 
Broken by https://github.com/NixOS/nixpkgs/pull/75729 since the desktop
items are only valid after post-processing. There's probably multiple
better ways to do this, but I'm not a calibre maintainer and I just want
to get this unbroken as quickly as possible.
 2020-04-02 11:52:39 +02:00
Timo Kaufmann 3abce7b376 Merge pull request #83788 from ryneeverett/vim-plugins-update-commit 
vimPlugins: Automate git commits when updating.
 2020-04-01 19:29:27 +00:00
Timo Kaufmann bd12256228 Merge pull request #83588 from evenbrenden/vim-pico8-syntax 
vimPlugins.vim-pico8-syntax: init at 2016-10-30
 2020-04-01 12:13:10 +00:00
Timo Kaufmann c9bf23e658 Merge pull request #83482 from doronbehar/improve-picard 
picard: add optional qtmultimedia dependency
 2020-03-31 19:37:28 +00:00
Timo Kaufmann 1b6245b4fb Merge pull request #82177 from tckmn/add-ipbt 
ipbt: init at 20190601.d1519e0
 2020-03-31 18:08:15 +00:00
Timo Kaufmann c6590b2063 Merge pull request #82259 from doronbehar/package-liberio 
liberio: init at unstable-2019-12-11
 2020-03-31 15:42:46 +00:00
Timo Kaufmann 83fd89945d Merge pull request #79661 from luc65r/pkg/cemu 
cemu: init at 1.3
 2020-03-31 15:17:33 +00:00
Timo Kaufmann 3bd7fc2800 Merge pull request #80752 from doronbehar/improve-abcde 
abcde: use python3 eyeD3
 2020-03-31 15:03:57 +00:00
Timo Kaufmann aaa8a8bcf9 Merge pull request #81007 from dawidsowa/thinkpad 
thinkpad-scripts: init at 4.12.0
 2020-03-31 15:02:35 +00:00
Timo Kaufmann da0fc069c3 Merge pull request #82003 from ymeister/master 
alsaequal: init at 0.6
 2020-03-31 14:56:56 +00:00
Timo Kaufmann d2774425f3 Merge pull request #83067 from doronbehar/update-gtk-gnutella 
gtk-gnutella: 1.1.14 -> 1.1.15
 2020-03-31 14:46:32 +00:00
Timo Kaufmann e2c72facec Merge pull request #83322 from doronbehar/improve-beets-test 
pythonPackages.beets: add unconditionally deps needed for checks
 2020-03-31 14:43:21 +00:00
Timo Kaufmann aa304bb398 Merge pull request #83795 from risicle/ris-nghttp2-python 
nghttp2: add python bindings as pythonPackages.nghttp2
 2020-03-31 14:27:04 +00:00
Timo Kaufmann 3aa6dcf21e Merge pull request #83826 from mmilata/prosody-0.11.5 
prosody: 0.11.3 -> 0.11.5
 2020-03-31 14:24:30 +00:00
Timo Kaufmann 24ead6996c Merge pull request #75129 from ryneeverett/legit-init 
legit: init at 1.2.0
 2020-03-31 14:22:31 +00:00
Timo Kaufmann d2e422fcef Merge pull request #83798 from ryneeverett/vim-plugins-update-proc 
vimPlugins: Add --proc flag to update script.
 2020-03-31 09:52:02 +00:00
Timo Kaufmann be749b3bc0 Merge pull request #83797 from r-ryantm/auto-update/python2.7-jupytext 
python27Packages.jupytext: 1.3.4 -> 1.4.1
 2020-03-30 19:02:34 +00:00
Timo Kaufmann fe9ea7a88a Merge pull request #83763 from timokau/home-manager-2020-03-17 
home-manager: 2020-03-07 -> 2020-03-17
 2020-03-30 14:30:05 +00:00
Timo Kaufmann a730888ce0 python.pkgs.tensorflow{,-bin,-estimator,-tensorboard}-2: Init at 2.1.0 
Major breaking change from 1.x, so treating keeping both versions for now.

(adapted from 33f11be707)
(adapted from 9e8dea7986)
 2020-03-30 13:58:28 +00:00
Timo Kaufmann 3df35ce37e home-manager: 2020-03-07 -> 2020-03-17 
Includes https://github.com/rycee/home-manager/pull/1099.
 2020-03-30 11:38:51 +02:00
Timo Kaufmann d8cb79d6a6 Merge pull request #83502 from minijackson/vimPlugins-gruvbox-community-2020-02-24 
vimPlugins.gruvbox-community: 2019-05-31 -> 2020-02-24
 2020-03-28 11:45:12 +00:00
Timo Kaufmann f076eced64 Merge pull request #79193 from equirosa/vimPlugins.vim-kitty-navigator 
vimPlugins.vim-kitty-navigator: init at 2019-11-04
 2020-03-28 11:38:17 +00:00
Timo Kaufmann c4f97342ba Merge pull request #69130 from millerjason/add-vimacs 
vimacs: init at 2016-03-24
 2020-03-27 19:14:42 +00:00
Timo Kaufmann 12c931a8e8 Merge pull request #83119 from ryneeverett/vim-plugins-update-redirects 
VimPlugins: update redirected repos
 2020-03-27 17:48:32 +00:00
Timo Kaufmann c6c0ae3be2 python.pkgs.doc8: add pygments dependency 
Without pygments doc8 will throw "errors" since it cannot check code
blocks. Pygments has since been added to the dependencies upstream [1],
though that hasn't made it into a release yet. I think we should already
adopt this now.

[1] https://github.com/PyCQA/doc8/commit/b6931816585e224019afddfc9d78ecbcf0549c74
 2020-03-27 10:39:36 -07:00
Timo Kaufmann d5c0289982 home-manager: extend platforms to unix 
To match the upstream default.nix.
 2020-03-25 19:26:11 +01:00
Timo Kaufmann a1a81b3fe7 home-manager: install bash completions 2020-03-25 19:25:55 +01:00
Timo Kaufmann 2136d80fb3 Merge pull request #83190 from doronbehar/update-newsboat 
newsboat: 2.18 -> 2.19
 2020-03-25 13:11:05 +00:00
Timo Kaufmann 4027538dfe Merge pull request #83004 from timokau/pandas-parallel-build 
python.pkgs.pandas: parallelize build
 2020-03-20 21:54:02 +00:00
Timo Kaufmann 4738b1f89f Merge pull request #83006 from timokau/vim-plugins-2020-03-20 
vimPlugins: update
 2020-03-20 17:10:53 +00:00
Timo Kaufmann 1711025a3d vimPlugins: update 
The vim-pandoc patch is now outdated and has been replaced by a better
workaround upstream:

https://github.com/vim-pandoc/vim-pandoc/pull/363
 2020-03-20 17:44:25 +01:00
Timo Kaufmann 81212e6955 python.pkgs.pandas: parallelize build 2020-03-20 16:50:40 +01:00
Timo Kaufmann 71331ee9ef Merge pull request #74846 from rummik/vam-regression 
Fix converting vam.pluginDictionaries to VimL
 2020-03-19 21:39:01 +00:00
Timo Kaufmann 3757e02434 python.pkgs.httpretty: disable flaky test suite 
There are some tests that fail occasionally because the current date
(with second precision) occurs in the output. This is fixed upstream.
I've made this conditional since python updates are often done in an
automated fashion and tests should be re-enabled after the next update.
This avoids the need for human intervention (except for a clean up at
some point in the future).
 2020-03-18 11:38:27 -07:00
Timo Kaufmann c8a67fd37b Merge pull request #82810 from timokau/vim-pandoc-fix 
vimPlugins.vim-pandoc: fix startup
 2020-03-17 22:24:38 +00:00
Timo Kaufmann 880f5a6125 vimPlugins.vim-pandoc: fix startup 2020-03-17 23:04:10 +01:00
Timo Kaufmann d8d0b60c22 Merge pull request #82766 from r-ryantm/auto-update/brial 
brial: 1.2.7 -> 1.2.8
 2020-03-17 14:29:02 +00:00
Timo Kaufmann 4ad4523600 Merge pull request #82773 from timokau/rpy2-pandas-1.x 
python3.pkgs.rpy2: fix tests with pandas 1.x, 3.2.5 -> 3.2.6
 2020-03-17 11:16:30 +00:00
Timo Kaufmann b8ed075c87 python3.pkgs.rpy2: 3.2.5 -> 3.2.6 2020-03-17 11:57:10 +01:00
Timo Kaufmann 9c8068c4c4 python3.pkgs.rpy2: fix tests with pandas 1.x 2020-03-17 11:57:10 +01:00
Timo Kaufmann 04a0ff8cc5 Merge pull request #82347 from timokau/home-manager-2020-03-07 
home-manager: 2020-01-04 -> 2020-03-07
 2020-03-16 16:36:10 +00:00
Timo Kaufmann 2e68526cec Merge pull request #82647 from timokau/retdec-fix 
retdec: fix build
 2020-03-15 13:58:21 +00:00
Timo Kaufmann e5642d405e retdec: fix build 
The build was broken by the gcc9 update. Pinning to gcc8 for now.
 2020-03-15 11:57:57 +01:00
Timo Kaufmann 6c0fa331f0 python.pkgs.smmap2: remove 
They were recently merged back together and smmap is the canonical
version:

https://github.com/gitpython-developers/smmap/issues/44
 2020-03-14 16:00:38 -07:00
Timo Kaufmann 8eacb87061 python.pkgs.GitPython: 3.0.5 -> 3.1.0 2020-03-14 16:00:38 -07:00
Timo Kaufmann 6db65f8d02 python.pkgs.gitdb2: remove 
The two are now the same:
https://github.com/gitpython-developers/gitdb/issues/59
 2020-03-14 16:00:38 -07:00
Timo Kaufmann e789990fb6 python.pkgs.gitdb: 0.6.4 -> 4.0.2 2020-03-14 16:00:38 -07:00
Timo Kaufmann a3735dcbd7 Merge pull request #82316 from timokau/sage-pari-2.11.3 
sage, pari: fix pari 2.11.3
 2020-03-12 12:23:32 +00:00
Timo Kaufmann ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann c4ab541443 pari: backport bug fix 
https://trac.sagemath.org/ticket/29313#comment:4
 2020-03-12 12:24:35 +01:00
Timo Kaufmann daebb49035 spotify: 1.1.10.546.ge08ef575-19 -> 1.1.26.501.gbe11e53b-15 
Works fine for me, although I did have to re-login.
 2020-03-12 00:31:38 +01:00
Timo Kaufmann c3fa56f3b4 home-manager: 2020-01-04 -> 2020-03-07 2020-03-11 23:08:34 +01:00
Timo Kaufmann 6687d1e638 Merge pull request #82239 from timokau/symmetrica-3.0.1 
symmetrica: 2.0 -> 3.0.1
 2020-03-10 23:57:19 +00:00
Timo Kaufmann 1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann 0c875c28c6 symmetrica: 2.0 -> 3.0.1 
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

https://gitlab.com/sagemath/symmetrica/-/commit/7cf91b380078a4def28dd6bab2b4607e2346c650
 2020-03-10 18:10:25 +01:00
Timo Kaufmann e05e219b31 Merge pull request #82240 from timokau/sage-docutils-0.15-fix 
sage: fix test suite with docutils 0.15
 2020-03-10 15:25:22 +00:00
Timo Kaufmann 7133577405 sage: fix test suite with docutils 0.15 
The better way to fix this would be to backport the upstream sphinx
patch:

https://github.com/sphinx-doc/sphinx/commit/faedcc48ccb942b9a7b758b699b30f0d026c0771

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
 2020-03-10 13:15:41 +01:00
Timo Kaufmann 63ed2bf3c3 Merge pull request #81950 from r-ryantm/auto-update/pari 
pari: 2.11.2 -> 2.11.3
 2020-03-09 17:31:14 +00:00
Timo Kaufmann b8a00580d0 Merge pull request #80657 from brettlyons/patch-1 
vimPlugins.notational-fzf-vim: patch plugin to fix missing runtime dependency
 2020-02-25 00:42:06 +00:00
Timo Kaufmann f4dbf4402b Merge pull request #80759 from Thra11/fix-r 
Fix R
 2020-02-23 23:48:21 +00:00
Timo Kaufmann ec6bf457bf Merge pull request #80728 from timokau/maven-jdk-overridable 
maven: make jdk overridable
 2020-02-21 14:49:41 +00:00
Timo Kaufmann 0141cfefbc maven: make jdk overridable 
This makes it possible to use maven with different (newer) jdks.

Fixes #75630
 2020-02-21 14:26:33 +01:00
Timo Kaufmann 9e1ca22f66 Merge pull request #79541 from r-ryantm/auto-update/m4ri 
m4ri: 20200115 -> 20200125
 2020-02-08 21:20:08 +00:00
Timo Kaufmann a752fb85bc Revert "rsyslog: 8.1911.0 -> 8.2001.0" 2020-02-06 22:16:09 +01:00
Timo Kaufmann c636a45e67 Merge pull request #78871 from drewrisinger/dr-pr-libcint 
libcint: init at 3.0.19
 2020-02-04 00:00:10 +01:00
Timo Kaufmann 769928e213 Merge pull request #78779 from drewrisinger/dr-pr-python-cirq 
python3Packages.cirq: init at 0.6.1
 2020-02-01 00:29:53 +01:00
Timo Kaufmann ff478eacdb Merge pull request #78866 from drewrisinger/dr-pr-sympy-bump 
pythonPackages.sympy: 1.5 -> 1.5.1
 2020-01-30 18:22:38 +01:00
Timo Kaufmann e39e304638 Merge pull request #78496 from r-ryantm/auto-update/brial 
brial: 1.2.6 -> 1.2.7
 2020-01-26 23:28:02 +01:00
Timo Kaufmann 7db53cc312 Merge pull request #78348 from timokau/pygments-lexer-fix 
python2.pkgs.ipython, python2.pkgs.sphinx: use proper python2 lexer
 2020-01-23 16:10:21 +01:00
Timo Kaufmann 0811a69fef python2.pkgs.sphinx: user proper python2 lexer 2020-01-23 09:40:26 +01:00
Timo Kaufmann 66675b5650 python2.pkgs.ipython: use the proper python2 lexer 
Since pygments 2.5 `PythonLexer` refers to python3 [1]. We have to be
explicit if we want to use python2.

[1] https://pygments.org/docs/changelog/
 2020-01-23 09:40:14 +01:00
Timo Kaufmann d62e410ccd Merge pull request #78222 from r-ryantm/auto-update/m4ri 
m4ri: 20140914 -> 20200115
 2020-01-22 17:43:44 +01:00
Timo Kaufmann d05843e841 Merge pull request #78302 from r-ryantm/auto-update/python2.7-jupytext 
python27Packages.jupytext: 1.3.1 -> 1.3.2
 2020-01-22 17:41:51 +01:00
Timo Kaufmann e8531b8ed4 Merge pull request #78220 from r-ryantm/auto-update/m4rie 
m4rie: 20150908 -> 20200115
 2020-01-22 09:57:07 +01:00