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Author SHA1 Message Date
Ben Darwin 7d16a4f56a python3Packages.batchgenerators: 0.20.1 -> 0.21 2021-02-23 11:29:10 -05:00
Ben Darwin 77b1b20df0 python3Packages.dicom2nifti: 2.2.8 -> 2.2.12 2021-02-22 14:33:35 -05:00
Ben Darwin 0fd1192132 itk: 5.1.1 -> 5.1.2 (#107502) 2021-01-01 12:59:14 -05:00
Ben Darwin 30c36ec838 f3d: 1.0.1 -> 1.1.0 2020-12-20 21:12:23 -05:00
Ben Darwin 120ec5f97e python3Packages.pyosf: init at 1.0.5 2020-12-02 01:36:24 -05:00
Ben Darwin 05a7ac3b2a python3Packages.mne-python: init at 0.21.2 2020-12-01 20:07:46 -05:00
Ben Darwin ee7d83e648 ants: unbreak on Darwin 2020-12-01 14:17:54 -05:00
Ben Darwin adaf73fd87 perlPackages.TextFormat: 0.61 -> 0.62 2020-12-01 11:41:16 -05:00
Ben Darwin 8864ea69c8 python3Packages.nibabel: remove platforms from meta since Aarch64 is now supported 
- see https://github.com/nipy/nibabel/issues/861
 2020-11-23 14:22:06 -05:00
Ben Darwin a319fd5d66 python3Packages.nilearn: 0.6.2 -> 0.7.0 2020-11-23 14:09:20 -05:00
Ben Darwin 1b86837cce ocamlPackages.owl: 0.10.0 -> 1.0.0 2020-11-16 21:35:47 +01:00
Ben Darwin c881ca60ed python3Packages.pytorch-metric-learning: 0.9.81 -> 0.9.94 2020-11-13 17:12:34 -08:00
Ben Darwin 001a975b75 python3Packages.dipy: 1.2.0 -> 1.3.0 2020-11-13 16:17:41 -08:00
Ben Darwin 8e17389a56 graspy: rename to graspologic 2020-10-25 10:17:35 +01:00
Ben Darwin 3e5c7bd09d simpleitk: 2.0.0 -> 2.0.1 2020-10-21 13:53:21 -04:00
Ben Darwin e20652da9b elastix: 5.0.0 -> 5.0.1; unbreak OS X build 2020-10-17 11:36:31 -07:00
Ben Darwin 83a1ce3d2b itk: remove -march=corei7 and -mtune=native flags from cmake build files 
- probable cause of build failure on Hydra on branch release-20.09
 2020-10-15 19:12:21 -04:00
Ben Darwin a68766978d python3Packages.scikit-fuzzy: init at unstable-2020-10-03 2020-10-09 10:56:17 -04:00
Ben Darwin af85623c53 c3d: unstable-2019-10-22 -> unstable-2020-10-05 2020-10-08 14:48:02 -04:00
Ben Darwin 07099cdb30 python3Packages.pydot_ng: remove 
- deprecated in favour of `pydot`
 2020-10-07 22:54:13 -07:00
Ben Darwin f31be2ec25 python3Packages.nipype: avoid use of neurdflib by default since it causes a package collision when rdflib is in the closure 2020-10-07 14:02:26 -04:00
Ben Darwin 921b15efe7 python3Packages.nipype: remove Python 2 support (dependency nibabel already unsupported) 2020-10-07 13:49:17 -04:00
Ben Darwin 95439a7e7d hdf5_1_8: remove 
- no longer needed as `libminc` has been updated to use the default hdf5
 2020-10-06 15:31:20 -04:00
Ben Darwin 44d854af30 bicgl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:19 -04:00
Ben Darwin e673c285e1 conglomerate: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin 44f2bf87d6 EZminc: update LIBMINC_DIR to reflect libminc CMake changes 2020-10-06 15:31:18 -04:00
Ben Darwin 85946918ac oobicpl: update LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:17 -04:00
Ben Darwin 83d0571ae6 mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc 2020-10-06 15:31:17 -04:00
Ben Darwin 9a190786a4 n3: 2017-09-18 -> 2018-08-09 
- update LIBMINC_DIR and EBTKS_DIR due to CMake updates in those packages
 2020-10-06 15:31:16 -04:00
Ben Darwin 7772e248ab inormalize: update LIBMINC_DIR and dependencies due to libminc update 2020-10-06 15:31:16 -04:00
Ben Darwin 2c33e9d1a4 bicpl: fix LIBMINC_DIR due to libminc CMake changes 2020-10-06 15:31:15 -04:00
Ben Darwin da69e470f2 EBTKS: update LIBMINC_DIR due to libminc update 2020-10-06 15:31:15 -04:00
Ben Darwin 91a429a148 minc_tools: unstable-2019-12-04 -> unstable-2020-07-25 2020-10-06 15:31:14 -04:00
Ben Darwin 3862e92e01 libminc: 2.4.03 -> unstable-2020-07-17 
- propagate hdf5 and netcdf since essentially every reverse dep of libminc depends on these
- switch to default HDF5 from 1.8.x series
- one resolved test failure and one new error (less concerning than before)
 2020-10-06 15:30:42 -04:00
Ben Darwin a94d0fe675 mrtrix: 3.0.0 -> 3.0.2 2020-09-30 22:13:18 -04:00
Ben Darwin 502721e0a5 simpleitk: 1.2.4 -> 2.0.0 2020-09-23 14:51:15 -04:00
Ben Darwin 8a3c9812cc gifticlib: init at unstable-2020-07-07 2020-09-23 12:07:37 -04:00
Ben Darwin 03ea51a8a3 python3Packages.dipy: 1.1.1 -> 1.2.0 2020-09-21 23:16:37 -07:00
Ben Darwin 9fde97d85f python3Packages.pyxnat: init at 1.3 2020-09-21 23:16:17 -07:00
Ben Darwin 8403806a39 python3Packages.rising: init at 0.2.0post0 2020-09-21 09:56:28 -07:00
Ben Darwin 1179840f9a python3Packages.graspy: 0.2.0 -> 0.3.0 2020-09-19 20:38:05 -07:00
Ben Darwin 5315ce0e40 python3Packages.hyppo: init at 0.1.3 2020-09-19 20:38:05 -07:00
Ben Darwin 1f5f6424a7 python3Packages.batchgenerators: 0.20.0 -> 0.20.1 2020-09-14 15:31:14 -04:00
Ben Darwin 2a4a6554eb python3Packages.threadpoolctl: 2.0.0 -> 2.1.0 2020-09-14 15:08:35 -04:00
Ben Darwin 98512f3eaa nifticlib: 2.0.0 -> 3.0.1 2020-09-09 15:26:04 -04:00
Ben Darwin c0df23122e f3d: init at 1.0.1 2020-09-02 11:48:56 -04:00
Ben Darwin fcf08a93fc itk: 5.1.0 -> 5.1.1 2020-08-31 19:26:45 -04:00
Ben Darwin 6fdfeda8b1 python3Packages.test-tube: init at 0.7.5 2020-08-23 16:45:26 -07:00
Ben Darwin 7ab4ee9613 python3Packages.pytorch-lightning: init at 0.8.5 2020-08-21 10:43:35 -07:00
Ben Darwin 9b589c7c9a itk4: 4.13.2 -> 4.13.3 2020-08-16 19:47:10 +00:00
Ben Darwin 323ba8a3d5 python3Packages.etelemetry: unbreak by adding correct dependencies 2020-07-22 21:05:49 -04:00
Ben Darwin 14feaae6fb python3Packages.ci-py: init at 1.0.0 2020-07-22 21:05:39 -04:00
Ben Darwin 87479d7d2a python3Packages.ci-info: init at 0.2.0 2020-07-22 20:29:00 -04:00
Ben Darwin e5e0645b57 python3Packages.nibabel: unbreak reverse deps by adding missing packaging dependency 2020-07-22 20:06:39 -04:00
Ben Darwin ea8f8bcc54 python3Packages.torchgpipe: init at 0.0.5 2020-07-16 17:49:23 -07:00
Ben Darwin f2d85f0433 python3Packages.pydicom: unbreak package by disabling a test failing due to a string matching issue in an assert 2020-07-16 15:24:54 -04:00
Ben Darwin 28becad9be minc-tools: actually build Nifti support 2020-07-06 11:09:33 -04:00
Ben Darwin a6d8a12e4e python3Packages.duecredit: init at 0.8.0 2020-06-12 12:33:44 -07:00
Ben Darwin 4c2504a6bf python3Packages.citeproc-py: init at 0.5.1 2020-06-12 12:33:44 -07:00
Ben Darwin a113aa5b6b python3Packages.rnc2rng: init at 2.6.4 2020-06-12 12:33:44 -07:00
Ben Darwin 7547926b81 ocamlPackages.biocaml: patch for -safe-string compilation with Ocaml 4.10 2020-05-28 09:08:51 +02:00
Ben Darwin 203d0644b4 ocamlPackages.owl: 0.8.0 -> 0.9.0 2020-05-28 09:08:51 +02:00
Ben Darwin 45cd7beeb2 bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
Ben Darwin 7f656f3ef6 bpp-popgen: init at 2.4.1 2020-05-25 21:12:17 -04:00
Ben Darwin a53b27829c bpp-phyl: init at 2.4.1 2020-05-25 21:10:59 -04:00
Ben Darwin 8d712ccc16 bpp-seq: init at 2.4.1 2020-05-25 21:09:52 -04:00
Ben Darwin adc7b4c979 bpp-core: init at 2.4.1 2020-05-25 21:08:31 -04:00
Ben Darwin b20f22d4cd python3Packages.pytorch-metric-learning: init at 0.9.81 2020-05-25 20:56:03 -04:00
Ben Darwin 710a48751a skorch: init at 0.8.0 2020-05-25 20:31:11 -04:00
Ben Darwin 5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
 2020-05-11 17:54:29 -04:00
Ben Darwin 1e0912d772 ocamlPackages.torch: init at 0.8 2020-05-09 19:29:47 -04:00
Ben Darwin 43d6898ea2 python3Packages.livelossplot: init at 0.5.0 2020-05-09 17:43:31 -04:00
Ben Darwin d78ba41a56 python3Packages.ipydatawidgets: init at 4.0.1 2020-05-08 07:43:25 +02:00
Ben Darwin 7ecde8b92b python3Packages.traittypes: init at unstable-2019-06-23 2020-05-08 07:43:25 +02:00
Ben DarwinandJon 81be227423 python3Packages.heudiconv: init at 0.8.0 (#86984) 
* python3Packages.heudiconv: init at 0.8.0

*python3Packages.heudiconv: rfc 45, quote homepage

Co-authored-by: Jon <jonringer@users.noreply.github.com>
 2020-05-07 11:30:16 -07:00
Ben Darwin 34807336e8 python3Packages.dicom2nifti: init at 2.2.8 2020-05-06 13:36:03 -07:00
Ben Darwin 4e2322ae7a python3Packages.neo: init at 0.8.0 2020-05-06 09:47:34 -07:00
Ben Darwin d737f310ff ocamlPackages.owl: unbreak by reversing previous edits 
- package was broken by 1c8aba83 (#83888)
 - fixes #85915
 2020-05-06 09:21:58 +02:00
Ben Darwin 5caa76705b elastix: update for ITK 5.1.0 
- fetch patches to build elastix 5.0 with ITK 5.1
- update 'platforms': builds on Darwin, fails on aarch64
 2020-05-05 00:08:04 -04:00
Ben Darwin 6f1430a802 ezminc: switch from itk5 to itk4 branch 
- itk5 branch currently lacks support for itk 5.1
 2020-05-05 00:08:04 -04:00
Ben Darwin 20cf206a09 simpleitk: itk -> itk4 
- simpleitk 1.2.4 is incompatible with ITK 5.1, so this can be reverted when 2.x is released.
 2020-05-05 00:08:04 -04:00
Ben Darwin 404834334b itk: 5.0.1 -> 5.1.0 2020-05-05 00:08:00 -04:00
Ben Darwin 5d88b43f58 python3Packages.pydicom: 1.4.1 -> 1.4.2 2020-05-04 23:19:44 -04:00
Ben Darwin e72b2beab0 vtk: unbreak on OS X 2020-05-04 10:47:27 -04:00
Ben Darwin dca8b1bdd0 python3Packages.transforms3d: init at unstable-2019-12-17 2020-05-01 09:35:06 +02:00
Ben Darwin 948b38300d vtkWithQt4: actually build QVTK libs/headers (#84772) 
- VTK_USE_QT is obsolete and didn't have the intended effect
 2020-04-29 19:11:14 -04:00
Ben Darwin cc89b93798 python3Packages.batchgenerators: 0.19.7 -> 0.20.0 2020-04-28 09:31:12 -07:00
Ben Darwin 70171d321e mrtrix: 3.0_RC3_latest -> 3.0.0 2020-04-28 10:37:06 -04:00
Ben Darwin fe07e2b2ac elastix: enable tests 2020-04-21 07:54:59 +02:00
Ben Darwin 30cafee8b6 elastix: python -> python3 2020-04-21 07:54:59 +02:00
Ben Darwin ad7b7367b6 beluga: 20180403 -> unstable-2020-03-11 2020-04-19 21:54:06 -04:00
Ben Darwin c62428963a ocamlPackages.sedlex_2: fix dependencies (as per 77901a9) 2020-04-19 21:50:37 -04:00
Ben Darwin 3a9f743605 ocamlPackages.linenoise: 1.1.0 -> 1.3.0 2020-04-19 21:50:37 -04:00
Ben Darwin 261d7c2f66 ocamlPackages.dune-build-info: init at 2.4.0 2020-04-19 21:50:37 -04:00
Ben Darwin 9b83c440f6 python3Packages.mayavi: build for Python 3 instead of Python 2 
- switch from wxPython to Qt5
 2020-04-14 12:43:56 -04:00
Ben Darwin 2d8f346c7c python3Packages.envisage: update and disable for Python 2 
- next release will drop support for Python 2
 2020-04-13 14:04:50 -04:00
Ben Darwin 5ac182265e python3Packages.pyface: remove optional wxPython dep 2020-04-13 12:33:51 -04:00
Ben Darwin 21f191cddb python3Packages.apptools: fix build 2020-04-13 12:32:37 -04:00
Ben Darwin 0dd910d470 python3Packages.graspy: init at 0.2 2020-04-10 00:08:42 -07:00
Ben Darwin 0473d4d62e python2Packages.traitsui: remove optional wxPython dependency 2020-04-09 10:04:04 -07:00