public/nixpkgs
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
152,713 Commits 1 Branch 0 Tags
5b8b9a08e7e39ecec9dab658cd0fd28fa586c8cb
Commit Graph
49 Commits
This Branch
This Branch
All Branches
Author SHA1 Message Date
Chris Ostrouchov a2bc529f22 siesta: init at 4.0.2 2018-09-14 15:40:25 -04:00
Chris Ostrouchov 2c7295ebe0 quantum-espresso: init at 6.3 2018-09-14 15:40:14 -04:00
Christopher Ostrouchov 9ef31b2f96 papi: init at 5.6.0 (#46619) 
papi is a high resolution performance counter.
 2018-09-13 23:35:06 +02:00
Christopher Ostrouchov e34a9fff1f scalapack: init at 2.0.2 (#46610) 
Added scalapack with flexibility to choose blas, lapack, and mpi
implementation.
 2018-09-13 21:27:47 +02:00
Chris Ostrouchov 96668812f3 libndtypes: refactor change linker support darwin 2018-09-13 15:20:31 -04:00
Chris Ostrouchov 5a944e4223 libxnd: refactor change linker support darwin 2018-09-13 15:20:08 -04:00
Christopher Ostrouchov 3c2a74719a parmetis: init at 4.0.3 (#46615) 2018-09-13 21:02:17 +02:00
Chris Ostrouchov 027b9beb58 fixup! merge: fixing changes with nixpkgs since pull-request 2018-09-11 17:14:12 -04:00
Christopher Ostrouchov dac171dd5d merge: fixing changes with nixpkgs since pull-request 
- pytest-timeout: no longer requires patch
 - joblib: was improperly merged with the github merge tool (never
   using again)
 2018-09-11 14:24:59 -04:00
Chris Ostrouchov 2895560f4f pythonPackages.markerlib: init at 0.6.0 2018-09-07 14:08:35 -04:00
Chris Ostrouchov a726956b42 pythonPackages.ncclient: refactor 
adding selectors2 as dependency of ncclient. Added recently 20 days
ago in August. https://github.com/ncclient/ncclient/commit/8ef20f282877097c8f51604679277db49c39f80c
 2018-09-07 10:22:22 -04:00
Chris Ostrouchov 11c3fe2258 pythonPackages.selectors2: init at 2.0.1 
Added package becuase now dependency of ncclient.
 2018-09-07 10:22:22 -04:00
Christopher Ostrouchov 66e1288962 pythonPackages.kubernetes: add missing dependency (#46179) 
fix build issue from missing dependency `adal`. This is due to `adal`
being added as a dependency in July
23rd. https://github.com/kubernetes-client/python/commit/9afec55f4a765b62e9e5b67dffa9d8f68a520987#diff-b4ef698db8ca845e5845c4618278f29a
 2018-09-07 11:25:53 +02:00
Christopher Ostrouchov 427e4910ec pythonPackages.ordered-set: add missing dependency (#46183) 
missing dependency for doing tests (pytestrunner) added three months
ago June https://github.com/LuminosoInsight/ordered-set/commit/c0b9308988a0c5953d98aecef63bb61f3a758609.
 2018-09-07 09:26:07 +02:00
Christopher Ostrouchov 6586765a8f pythonPackages.phonopy: refactor (#46161) 
Fixing phonopy not building. Tests were moved on Jul 30.
 2018-09-07 08:41:24 +02:00
Christopher Ostrouchov b5b48c0a91 pythonPackages.locustio: 0.8.1 -> 0.9.0 (#46191) 
Fixing build issue. Additionally fetching from github becuase pypi
packge does not come with README which is a buildtime dependency.
 2018-09-07 08:38:41 +02:00
Christopher Ostrouchov b1d6d159aa pythonPackages.pyslurm: 20180604 -> 20180811 (#46187) 
Update version to support latest version of slurm. Fixes since
previously did not build.
 2018-09-07 08:28:12 +02:00
Christopher Ostrouchov 7bcc2870c7 pythonPackages.jupyterlab_launcher: refactor (#46178) 
jupyterlab_launcher does not support python version < 3.5. Disabled
for older versions
 2018-09-06 20:40:43 +02:00
Chris Ostrouchov 1d6fd65957 pythonPackages.geopandas: 0.3.0 -> 0.4.0 
Additionally fix issue with tests failing for 18.09 release.

Tests required url fetch. Disabled with "not web".
 2018-09-06 18:50:11 +02:00
Chris Ostrouchov 63cf879d6c pythonPackages.pymatgen: 2018.8.10 -> 2018.9.1 
Also 2018.8.10 does not build in previous state because auto updating
from pypi did not account for a new requirement `networkx`. This has
been added.
 2018-09-06 00:04:28 -04:00
Christopher Ostrouchov ed130935c8 Merge branch 'master' into costrouc/dask-distributed 2018-09-05 23:53:23 -04:00
Chris Ostrouchov 4f70170f8a pythonPackages.distributed: 1.15.1 -> 1.22.1 
The github repository was downloaded instead of the pypi repository
for testing (needed `conftest.py`). Major work was done on the
underlying dependencies to make distributed work on python 2.7,
3+. Note that the test **do** take a significant amount of time (10-15
minutes).

 - moved to `python-modules`
 - compatible with 2.7, 3+
 - all tests pass (previously tests were not run)
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov 7b920172db pythonPackages.pytest-repeat: init at 0.6.0 
- compatible with 2.7, 3+
 - all tests pass and running
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov 05890dda3d pythonPackages.joblib: 0.12.1 -> 0.12.2 
In order to get all the tests passing the Github repository was
downloaded instead of from pypi so that the `conftest.py` is
available.

In addition to updating the version:

  - compatible with 2.7, 3+ now
  - all tests are running and passing
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov 3a56e314b8 pythonPackages.python-lz4: init at 2.1.0 
Fetching from github repository instead of pypi so that all tests can
be run.

 - compatible with 2.7, 3+
 - all tests pass
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov 5704642a3f pythonPackages.pytest-faulthandler: init at 1.5.0 
- compatible with 2.7 and 3+
 - all test pass.
 2018-09-05 23:46:28 -04:00
Chris Ostrouchov dd12060b94 libxnd: init at 0.2.0dev3 
General container that maps a wide range of Python values directly to memory."
 2018-08-27 12:30:18 -04:00
Chris Ostrouchov e2f92066a2 libndtypes: init at 0.2.0dev3 
Dynamic types for data description and in-memory computations
 2018-08-11 16:01:00 -04:00
Chris Ostrouchov 058e22e0a3 pythonPackages.dftfit: init at 0.4.11 
- tests require lfs download so not run
 - python 3+
 - fetchpypi since fetchurl is large download
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov dc552ab32e pythonPackages.lammps-cython: init at 0.5.7 
- python 3+
 - all tests pass
 - fetchurl since project based in gitlab and to run tests
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov fb40e62657 pythonPackages.pymatgen-lammps: init at 0.4.5 
- all tests pass
 - python 3+
 - fetchurl since package is on gitlab
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov ff27546351 pythonPackages.pygmo: init at 2.8 
- python 2.7, 3+
 - skipping tests becuase none are easy to run (require some parallel workers)
 - fetchFromgitHub so that running tests in future is possible
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov def307e476 pagmo2: init at 2.8 
- c++ headers for library
 - parallel optimization framework
 - all tests but 1/55 pass so skipping tests
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov 4716facdd1 pythonPackage.ase: init at 3.16.2 
- tests just hang so skipping tests
 - python 2.7, 3+
 - repository is in gitlab so had to fetchurl
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov 0513a0054d pythonPackages.pathlib: init at 1.0.1 
- python 2.7, 3+
 - all tests pass
 - package is depricated but is required by a package
 2018-08-10 16:49:06 -04:00
Chris Ostrouchov da136c4618 pythonPackages.docutils: refactored 
- moved docutils to `python-modules`
 2018-08-10 16:39:53 -04:00
Chris Ostrouchov eb6e376753 pythonPackages.pytest-benchmark: init at 3.1.1 
- fetchFromGitHub to get all tests
 - all tests pass
 - python 2.7, 3+
 2018-08-10 16:38:38 -04:00
Chris Ostrouchov 6e9d37713a pythonPackages.statistics: init at 1.0.3.5 
- package does not come with tests
 2018-08-10 16:37:45 -04:00
Chris Ostrouchov 90c353d44e pythonPackages.py-cpuinfo: init at 4.0.0 
- fetchFromGitHub to run all tests
 - all tests pass
 2018-08-10 16:36:50 -04:00
Chris Ostrouchov 9745611ed6 lammps: 16Feb16 -> patch_2Aug2018 
Major changes and update to lammps build

 - using fetchFromGitHub to get source instead of lammps mirror
 - configurable lammps packages included and includes for compilation
 - cleaner build script
 - preserving the executable, shared library names, and include headers
 2018-08-10 16:35:54 -04:00
Chris Ostrouchov 7e192a55e7 pythonPackages.pytest-timeout: refactor add python 2.7 compatibiliy 
In version 1.3.1 of `pytest-timeout` (latest) the setup.py file is not
compatible with python 2.7 and 3+ due to how `open` is called. A patch
has been added that can be removed once a fix and new relase is given.
 2018-08-09 10:46:07 -04:00
Christopher Ostrouchov 1d46027c3d pythonPackages.pysrim: init at 0.5.8 (#44756) 
- compatible with 2.7, 3+
 - tests are not run due to requiring git lfs download of repository
 2018-08-09 00:31:51 +02:00
Christopher Ostrouchov 74f0282d65 pythonPackages.singledispatch: move expression (#44654) 2018-08-08 22:35:46 +02:00
Christopher Ostrouchov 8de02232c5 pythonPackages.sortedcontainers: 1.5.7 -> 2.0.4 (#44653) 
Moving sortedcontianers from top-level -> python-modules and updating
to newest sortedcontianers release.
 2018-08-08 22:12:12 +02:00
Christopher Ostrouchov c2e7a20f34 pythonPackages.docrep: init at 0.2.3 (#44665) 2018-08-08 10:53:28 +02:00
Christopher Ostrouchov 6ec399ef23 pythonPackages.jupyterlab: 0.32.1 -> 0.33.7 (#44638) 
previous jupyterlab 0.32.1 did not build due to requiring
jupyterlab_launcher version between (0.10.0 <-> 0.11.0) now
requires (0.11.2 <-> 0.12.0).
 2018-08-08 10:16:13 +02:00
Christopher Ostrouchov 1e8a03e241 Add costrouc to maintainer list (#44655) 
Added `costrouc` to maintainer list. email, github, and name
 2018-08-08 08:07:45 +02:00
Chris Ostrouchov d076a13c1d openmpi: patch for legitimate zero size messages 
This patch is required in order to make python-mpi4py tests pass.
It is also a bug in the openmpi implementation to see full discussion
see https://www.open-mpi.org/community/lists/users/2015/11/28030.php
 2016-04-04 11:09:00 -04:00
Chris Ostrouchov a32d5d3755 lammps: init at 2016-02-16 2016-04-01 18:37:52 -04:00