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Author SHA1 Message Date
Ben Darwin c81a2e6a1e ocamlPackages.npy: init at unstable-2019-04-02 2020-02-11 07:33:42 +01:00
Ben Darwin c79d6d0430 c3d: 2018-10-04 -> unstable-2019-10-22; mark unbroken 2020-02-10 20:58:35 +01:00
Ben Darwin 7059f44440 python3Packages.tensorly: init at 0.4.5 2020-02-10 20:21:28 +01:00
Ben Darwin 35bfcc98c9 python3Packages.sparse: mark unbroken (package has been previously updated) 2020-02-10 20:21:28 +01:00
Ben Darwin 39f0e3b32b minc_tools: enable building conversion tools 2020-02-10 19:53:25 +01:00
Ben Darwin bcad453bcf minc_tools: 2017-09-11 -> unstable-2019-12-04 2020-02-10 19:53:25 +01:00
Ben Darwin 134b645343 python3Packages.nilearn: unbreak package 2020-02-06 19:59:14 +01:00
Ben Darwin f5c191739b pythonPackages.pydicom: 1.3.0 -> 1.4.1 
- routine update; unbreaks with Python 3.8 (not supported before 1.4.1)
 2020-02-06 19:59:14 +01:00
Ben Darwin 83bdc1d989 python3Packages.nibabel: 3.0.0 -> 3.0.1 
- this unbreaks the package due to erroring tests in 3.0.0
- remove obsolete (mostly Python2-related) deps
- add deps to support MINC, DICOM, and SPM formats
- only build on x64 due to a dtype bug on Arm64
 2020-02-06 19:59:14 +01:00
Ben Darwin d55c1b09ce ocamlPackages.bistro: propagate buildInputs 2020-02-06 09:39:25 +01:00
Ben Darwin 00cd1d0f21 ocamlPackages.parmap: init at 1.1 2020-02-04 17:49:45 +01:00
Ben Darwin 3ac3677876 octave: build without qscintilla by default 
- qscintilla is used for IDE features in the GUI, which is not built since qt support isn't enabled
- this removes qt from the Octave closure
 2020-02-03 10:29:17 -05:00
Ben Darwin 046730ebdb pythonPackages.pydicom: init at 1.3.0 2020-01-16 12:34:09 -08:00
Ben Darwin 54c409eb01 pythonPackages.pyezminc: remove 
- package supports Python 2 only
- develop-python3 branch exists but datatype tests fail
- not updated since 2018
 2020-01-16 12:14:49 -08:00
Ben Darwin 8f1994c2cc pythonPackages.pynrrd: init at 0.4.2 2020-01-14 10:33:55 -08:00
Ben Darwin ee7d45c638 pythonPackages.hydra: init at 1.4.1 2020-01-09 22:54:16 -08:00
Ben Darwin 60c03fb380 pythonPackages.omegaconf: init at 1.4.1 2020-01-09 22:54:16 -08:00
Ben Darwin b4615c3b6a python3Packages.pycm: init at 2.5 2020-01-08 16:19:47 -08:00
Ben Darwin 81179a4d56 pythonPackages.crc32c: init at 2.0 2020-01-07 20:55:18 -08:00
Ben Darwin d255365342 ocamlPackages.parany: 7.0.0 -> 8.0.0 2019-12-26 17:31:16 -05:00
Ben Darwin f1958523e3 ocamlPackages.cpu: setcore 1.0.1 -> cpu 2.0.0 2019-12-26 17:30:49 -05:00
Ben Darwin 80da0a626e functoria: 2.0.2 -> 3.0.3 2019-12-22 20:45:12 -05:00
Ben Darwin 2ea7b81750 netcdf: 4.6.1 -> 4.7.3 
and enable tests as per unmerged #56830
 2019-12-20 13:56:53 +01:00
Ben Darwin 52d15ab28b libminc: 2018-01-17 -> 2.4.03 and disable broken checkPhase on OSX 2019-12-09 14:19:15 -05:00
Ben Darwin bfe5d1cc96 ocamlPackages.owl: 0.7.1 -> 0.7.2 
- also enable tests (except on OSX) due to upstream fixes
 2019-12-09 11:00:11 -05:00
Ben Darwin e85fe01325 plplot: init at 5.15.0 2019-12-06 14:41:39 -05:00
Ben Darwin f3f6aa4475 metrics-unix: fix gnuplot input 2019-12-06 12:14:38 -05:00
Ben Darwin 3fa5a19cf8 ocamlPackages_latest.phylogenetics: init at unstable-2019-11-15 2019-12-06 12:00:44 -05:00
Ben Darwin 13f55534cb owl-base: remove unused input 2019-12-06 12:00:44 -05:00
Ben Darwin 6ac6e7ac0b owl: propagate eigen 2019-12-06 12:00:44 -05:00
Ben Darwin b103ec0911 ocamlPackages.gnuplot: init at 0.5.3 2019-12-06 12:00:44 -05:00
Ben Darwin eddfe95f29 ocamlPackages.biocaml: init at 0.10.0 2019-12-06 12:00:44 -05:00
Ben Darwin 6b8de994a1 ocamlPackages.cfstream: init at 1.3.0 2019-12-06 12:00:44 -05:00
Ben Darwin d016a507ea ocamlPackages.{owl-base,owl}: init at 0.7.1 2019-11-29 17:22:45 +00:00
Ben Darwin 777efe8425 ocamlPackages.eigen: init at 0.1.4 2019-11-29 17:22:45 +00:00
Ben Darwin 06ddb4a49f ocamlPackages.parany: init at 7.0.0 2019-11-29 11:12:08 -05:00
Ben Darwin eb1efb718c ocamlPackages.setcore: init at 1.0.1 2019-11-29 11:12:02 -05:00
Ben Darwin e3e3bd61f8 pythonPackages.gpyopt: provide setuptools at runtime, needed by the package 2019-11-18 20:08:13 -08:00
Ben Darwin b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
Ben Darwin 634effcea4 gpyopt: init at unstable-2019-09-25 2019-11-15 16:24:11 -05:00
Ben Darwin 736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Ben Darwin 8d7fef4912 pythonPackages.pyezminc: mark as unbroken 2019-10-26 09:55:30 -07:00
Ben Darwin ddc2955ad9 EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
Ben Darwin cb6d819b93 niftyseg: init at 1.0.0 2018-11-16 12:29:29 -05:00
Ben Darwin 6aa3deeb50 niftyreg: init at 1.3.9 2018-11-16 12:24:53 -05:00
Ben Darwin 0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Ben Darwin de897bacea celf: init at 2013-07-25 (#41141) 2018-05-28 21:27:53 +02:00
Ben Darwin a6a38c7118 python2Packages.pyezminc: init at 1.2.01 2018-05-26 12:51:10 -04:00
Ben Darwin 1e50e178ae simpleitk: init at 1.1.0 (note this only builds the C++ libs, not the Python/Lua/... bindings) (#27451) 
* conglomerate: init at 2017-09-10

* simpleitk: init at 1.1.0 (note this only builds the C++ libs, not the Python/Lua/... bindings)
 2018-05-09 15:50:01 -05:00
Ben Darwin 6266387bfa libminc: 2017-09-14 -> 2018-01-17 2018-05-09 16:25:22 -04:00
Ben Darwin 7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Ben Darwin a9492eb70f Merge branch 'master' of github.com:NixOS/nixpkgs 2018-05-09 13:37:33 -04:00
Ben Darwin fa850e8fda conglomerate: init at 2017-09-10 2018-04-27 18:57:17 -04:00
Ben Darwin 837e8c342c conglomerate: init at 2017-09-10 2018-04-27 18:52:56 -04:00
Ben Darwin 6908f0ce89 c3d: updated rev still won't compile; mark broken 2018-04-10 13:40:53 -04:00
Ben Darwin 1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin 1595f3cc45 delete broken alias 2018-04-09 20:29:29 -04:00
Ben Darwin 524b606f16 disable a second libminc test 2018-04-09 20:29:03 -04:00
Ben Darwin c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin 6972e366be arguments: init at 2015-11-30 2018-04-09 18:07:52 -04:00
Ben Darwin de2f36982b ezminc: init at 2017-08-29 2018-04-09 18:07:15 -04:00
Ben Darwin c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin c14342d44f itk: enable more MINC support 2018-04-09 18:06:54 -04:00
Ben Darwin cf2aac6a04 address license/version issues for PR #29782 2018-04-09 18:06:54 -04:00
Ben Darwin e90d1e8631 inormalize: init at 1.0.20 (develop branch) 2018-04-09 18:06:54 -04:00
Ben Darwin 54c543b03b n3: init at 1.0.20 2018-04-09 18:06:54 -04:00
Ben Darwin f532f9f5f4 minc-widgets: init at "1.0.0" (package seems to lack a consistent version) 2018-04-09 18:06:33 -04:00
Ben Darwin bd460f54a3 mni_autoreg: init at 0.99.70 2018-04-09 18:06:33 -04:00
Ben Darwin 61864898f3 perlPackages.MNI-Perllib: init at 0.08 2018-04-09 18:06:33 -04:00
Ben Darwin e7d447ce2c EBTKS: init at 1.6.50 (develop branch) 2018-04-09 18:06:33 -04:00
Ben Darwin 082b3f1058 minc-tools: 2.3.00 -> 2.3.01 (develop branch) 2018-04-09 18:06:33 -04:00
Ben Darwin fa2cc0e72f perlPackages.TextFormat: init at 0.60 2018-04-09 18:05:53 -04:00
Ben Darwin 99dc5f4ab0 libminc: 2.3.00 -> 2.3.01 (develop branch) 2018-04-09 18:05:53 -04:00
Ben Darwin 9f70551937 beluga: init at 20180403 2018-04-04 17:24:28 -04:00
Ben Darwin d2c20d3a21 abella: 2.0.4 -> 2.0.5 2018-04-04 08:15:01 +02:00
Ben Darwin 0d981c5761 nifticlib: init at 2.0.0 2017-09-20 19:04:22 -04:00
Ben Darwin c7bbe471b0 ants: bump version and fix sandboxed build 2017-09-20 18:42:34 -04:00
Ben Darwin d1d0824b2f elastix: change platforms to "linux" from "unix" 2017-07-19 17:41:14 -04:00
Ben Darwin b21805d972 elastix: init at 4.8 2017-05-23 18:25:15 -04:00
Ben Darwin fbc9a4d7dc ants: set $ANTSPATH variable in shell scripts 2017-03-22 16:01:05 -04:00
Ben Darwin 7baad2e4be c3d: init at 1.1.0 2017-03-10 11:57:19 -05:00
Ben Darwin f02ac9588f mark old seg3d as broken for now since it no longer builds with stock gcc version and flags 2017-03-09 19:06:17 -05:00
Ben Darwin 05359c327b ANTs: init at 2.1.0 (0gyys1lf) 2017-03-01 21:06:30 -05:00
Ben Darwin a896233396 jags: 3.4.0 -> 4.1.0 (#16804) 
* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
 2016-07-18 13:11:18 +02:00
Ben Darwin 07cfc1553f stan: fix build by not running tests with nonexistent /usr/bin/python (#15968) 2016-06-26 22:52:58 +02:00
Ben Darwin 8c10d146af pythonPackages.nilearn: init at 2.5.0 2016-06-24 15:00:12 -04:00
Ben Darwin 59580b040b pythonPackages.nipy: add matplotlib as a dependency 2016-06-24 11:47:46 -04:00
Ben Darwin 786a10c9b6 pythonPackages.nipy: init at 0.4.0 2016-06-23 20:27:28 -04:00
Ben Darwin a4ad51f0c1 switch from pkgs.blas to numpy.blas 2016-04-25 12:33:31 -04:00
Ben Darwin 5a2563c059 theano: init at 0.8.1 2016-04-11 15:00:09 -04:00
Ben Darwin aff6c3b77d pydot_ng: init at 1.0.0 2016-03-31 18:34:30 -04:00
Ben Darwin 8347f94216 fix nesting error resulting in topydo metadata being attached to the enclosing set 2016-03-30 19:56:01 -04:00
Ben Darwin 69c628e1ff minc-tools: init at 2.3.00 2016-02-23 14:03:56 -05:00
Ben Darwin c49c384e20 libminc: init at 2.3.00 2016-02-23 14:03:10 -05:00
Ben Darwin 8565efc4da remove manual derivation for popup-mode 2015-12-30 10:36:15 -05:00
Ben Darwin 8f7a867dcc emacsPackagesNg.popup: 0.5.0 -> 0.5.2 2015-04-19 02:36:31 -04:00
Ben Darwin f023c0a023 new emacs package: button-lock 1.0.2 2015-04-19 01:02:49 -04:00
Ben Darwin 54dab782be twelf: fix by actually including the Twelf SML heap image in the package and referencing the SML interpreter so the smlnj package won't be gc'd 2015-03-31 01:11:57 -04:00
Ben Darwin 172167c937 new package: abella 2.0.2 2015-03-24 00:54:03 -04:00