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Timo Kaufmann 5f2b8de75c Revert "pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446)" (#51414) 
This reverts commit d9b650f4cc.

The update is causing segfaults. See
https://trac.sagemath.org/ticket/26442.
 2018-12-03 00:44:33 +01:00
Timo Kaufmann 88b69a0d40 Merge pull request #51337 from timokau/sagenb-matplotlib-fix 
sage: misc fixes
 2018-12-01 22:04:48 +01:00
Timo Kaufmann 0e570199de sage: fix jmol integration 2018-12-01 21:31:29 +01:00
Timo Kaufmann cb73495f02 sagenb: fix matplotlib path 2018-12-01 20:41:40 +01:00
Timo Kaufmann d9b650f4cc pythonPackages.cypari2: 1.3.1 -> 2.0.1 (#49446) 2018-12-01 12:57:55 +01:00
Timo Kaufmann aa053197de Merge pull request #51191 from timokau/sage-fixes 
sage: fix test timeout and downgraded R tests
 2018-11-28 23:10:32 +01:00
Timo Kaufmann d6376bca6d sage: don't test the downgraded R 
Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249. The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
 2018-11-28 22:52:15 +01:00
Timo Kaufmann 359bf7f1e3 sage: disable test timeout 
Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
 2018-11-28 22:37:24 +01:00
Timo Kaufmann 63b39af496 pythonPackages.rpy2: various fixes (#51084) 
- make sure libreadline is found at runtime
- make sure python libraries are found at runtime
- add libraries necessary to pass the testsuite and standard libraries
 2018-11-27 18:24:37 +01:00
Timo Kaufmann 2fbde72556 sage: add tkinter as matplotlib backend (#51032) 
Fixes #50959.
 2018-11-25 17:38:45 +01:00
Timo Kaufmann a7d9d2e860 Merge pull request #51030 from timokau/sage-jupyter 
sage: add jupyter notebook support
 2018-11-25 16:11:08 +01:00
Timo Kaufmann 98c94d3d7d sage: add jupyter notebook support 
Fixes #48544.
 2018-11-25 15:54:31 +01:00
Timo Kaufmann 0c23fa9aaf Merge pull request #50998 from timokau/sage-refactor 
Sage refactor
 2018-11-24 23:59:28 +01:00
Timo Kaufmann a0723f1285 sage: don't fix node version 2018-11-24 23:14:38 +01:00
Timo Kaufmann e28a8ed287 sage: add some flexibility to the test runner 
Make it possible to run individual tests. This is very useful while
git-bisecting.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 21f9123ea6 sage: remove openblas hack 
The pc files have since been included into the openblas package.
 2018-11-24 23:14:38 +01:00
Timo Kaufmann 3832ddedb9 sage: refactor 2018-11-24 23:14:33 +01:00
Timo Kaufmann 9b4a518465 sage: drop known-padics-failure patch 
The failure was not observed for a while and is probably fixed now.
 2018-11-24 19:01:57 +01:00
Timo Kaufmann ca6475b5e8 sage: drop unused patches 2018-11-24 19:01:57 +01:00
Timo Kaufmann 6059bf842a Merge pull request #49994 from r-ryantm/auto-update/python3.6-cvxopt 
python36Packages.cvxopt: 1.2.1 -> 1.2.2
 2018-11-20 14:25:43 +01:00
Timo Kaufmann 5e3af1255b pythonPackages.cvxopt: mark as broken on darwin 
See https://github.com/NixOS/nixpkgs/pull/49994#issuecomment-437589336.
 2018-11-20 13:20:29 +01:00
Timo Kaufmann 73d83ba7a8 erlang: remove aarch64 from platforms 
The build is failing.
 2018-11-18 12:45:54 +01:00
Timo Kaufmann 3aa6b8ccc5 pythonPackages.cython: don't test codestyle (#50432) 
This requires pycodestyle when using python3 and adding it leads to test
failures for some reason. Maybe some patching we do. There is no reason to
test codestyle for a distro, so just disable it.
 2018-11-18 10:33:42 +01:00
Timo Kaufmann d53c0a71ab pythonPackages.cython: don't test codestyle (#50432) 
This requires pycodestyle when using python3 and adding it leads to test
failures for some reason. Maybe some patching we do. There is no reason to
test codestyle for a distro, so just disable it.
 2018-11-16 09:21:06 +01:00
Timo Kaufmann e3592a0abe Merge pull request #50350 from kwohlfahrt/houdini 
houdini: 16.5.439 -> 17.0.352
 2018-11-14 15:42:43 +01:00
Timo Kaufmann 1c93a4994a Merge pull request #50132 from r-ryantm/auto-update/fwup 
fwup: 1.2.5 -> 1.2.6
 2018-11-10 15:17:51 +01:00
Timo Kaufmann 3cec0b0c17 Merge pull request #50172 from r-ryantm/auto-update/aha 
aha: 0.4.10.6 -> 0.5
 2018-11-10 15:10:46 +01:00
Timo Kaufmann bfa37c55d6 Merge pull request #50162 from r-ryantm/auto-update/acpica-tools 
acpica-tools: 20180927 -> 20181031
 2018-11-10 15:08:05 +01:00
Timo Kaufmann 9d11846f18 Merge pull request #50152 from r-ryantm/auto-update/chirp-daily 
chirp: 20181009 -> 20181018
 2018-11-10 15:06:10 +01:00
Timo Kaufmann 88d7246ee1 Merge pull request #50140 from r-ryantm/auto-update/cpp-hocon 
cpp-hocon: 0.2.0 -> 0.2.1
 2018-11-10 15:00:28 +01:00
Timo Kaufmann 28d2ab7ed3 Merge pull request #50142 from danieldk/racer-no-rustup 
rustracer: remove rustup dependency
 2018-11-10 14:20:03 +01:00
Timo Kaufmann ea8d794026 Merge pull request #50092 from r-ryantm/auto-update/jmol 
jmol: 14.29.26 -> 14.29.28
 2018-11-10 10:13:35 +01:00
Timo Kaufmann efe6322ce4 pythonPackages.networkx: 2.1 -> 2.2 2018-11-07 20:15:37 +01:00
Timo Kaufmann 72e6e792f6 sage: add fetchSageDiff utility function 2018-11-07 20:15:37 +01:00
Timo Kaufmann 30707eb8ef Merge pull request #49873 from rafaelgg/fix-flashplayer-libglvnd 
flashplayer: add libglvnd dep
 2018-11-07 16:56:53 +01:00
Timo Kaufmann 6141939d6e Merge pull request #44439 from Ekleog/meta-tests 
[RFC] Use `meta.tests` to link from packages to the tests that test them
 2018-11-07 00:05:22 +01:00
Timo Kaufmann 7ca7e89fc1 Merge pull request #49727 from dtzWill/update/jdupes-1.11 
jdupes: 1.10.4 -> 1.11
 2018-11-04 11:49:06 +01:00
Timo Kaufmann f2e6f8d99c Merge pull request #49739 from timokau/spotify-1.0.93 
spotify: 1.0.83.316.ge96b6e67-5 -> 1.0.93.242.gc2341a27-15
 2018-11-04 11:46:32 +01:00
Timo Kaufmann 7859957e56 spotify: 1.0.83.316.ge96b6e67-5 -> 1.0.93.242.gc2341a27-15 2018-11-04 11:30:14 +01:00
Timo Kaufmann 4133885dab pythonPackages.pyzmq: use zeromq4 2018-10-31 19:15:55 +01:00
Timo Kaufmann fdba69326d Merge pull request #49522 from timokau/youtube-dl-2018.10.29 
youtube-dl: 2018.10.05 -> 2018.10.29
 2018-10-31 15:58:40 +01:00
Timo Kaufmann 6ff17834db youtube-dl: 2018.10.05 -> 2018.10.29 2018-10-31 14:41:17 +01:00
Timo Kaufmann 34b3a0897f pythonPackages.entrypoints: fix python2 build 
The recent pytest upgrade in bea4b361a0e3a21b1e9a69d56f1ebd16fb38a296
broke the test suite.
 2018-10-30 20:44:18 +01:00
Timo Kaufmann 835df8a8a8 Merge pull request #49452 from timokau/sympy-1.3 
pythonPackages.sympy: 1.2 -> 1.3
 2018-10-30 15:45:45 +01:00
Timo Kaufmann 1dd7443c93 pythonPackages.sympy: 1.2 -> 1.3 2018-10-30 13:16:38 +01:00
Timo Kaufmann be08e69372 Merge pull request #49447 from timokau/memory_profiler-0.54.0 
pythonPackages.memory_profiler: add plotting dependency, enable checks
 2018-10-30 11:51:00 +01:00
Timo Kaufmann 64f6b9eb95 pythonPackages.memory_profiler: add plotting dependency, enable checks 2018-10-30 11:28:08 +01:00
Timo Kaufmann f2b8262e05 Merge pull request #49248 from timokau/sage-fix-attrname 
sage: fix attrname, add sagemath alias
 2018-10-27 18:24:35 +02:00
Timo Kaufmann 2754ec233c Merge pull request #49243 from r-ryantm/auto-update/matomo 
matomo: 3.6.0 -> 3.6.1
 2018-10-27 14:41:35 +02:00
Timo Kaufmann 80833d13fe sage: add sagemath alias 
Sage is commonly referred to as sagemath (probably to improve
searchability). Many other distors call their package sagemath.
 2018-10-27 14:18:09 +02:00
Timo Kaufmann 2513747356 sage: fix attrname 
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
 2018-10-27 14:18:08 +02:00
Timo Kaufmann 7970a5a475 Merge pull request #49225 from timokau/arb-2.15.1 
arb: 2.14.0 -> 2.15.1
 2018-10-27 12:36:51 +02:00
Timo Kaufmann fbea2cd77a arb: 2.14.0 -> 2.15.1 2018-10-27 11:27:03 +02:00
Timo Kaufmann 3421430d9c Merge pull request #49182 from r-ryantm/auto-update/python3.6-Flask-Babel 
python36Packages.flask-babel: 0.11.2 -> 0.12.2
 2018-10-26 21:48:54 +02:00
Timo Kaufmann 6455346395 Merge pull request #49093 from NixOS/revert-46992-auto-update/ocamlbuild 
Revert "ocamlPackages.ocamlbuild: 0.12.0 -> 0.13.0"
 2018-10-25 09:41:05 +02:00
Timo Kaufmann eb3240f112 Revert "ocamlPackages.ocamlbuild: 0.12.0 -> 0.13.0" 2018-10-25 09:40:39 +02:00
Timo Kaufmann 9a2fd03d67 Merge pull request #49073 from urkud/kile-2.9.92 
kile: 2017-02-09 -> 2.9.92
 2018-10-24 23:29:39 +02:00
Timo Kaufmann 2ce2fcfc30 pythonPackages.cython: 0.28.5 -> 0.29 
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
 2018-10-24 20:05:44 +02:00
Timo Kaufmann 4769c7cd76 Merge pull request #49008 from timokau/ntl-11.3.1 
ntl: 11.3.0 -> 11.3.1
 2018-10-24 17:10:04 +02:00
Timo Kaufmann b5207ec0ad ntl: 11.3.0 -> 11.3.1 
"Fixed a bug that effected image, kernel, and gauss routines for
Mat<zz_p>. These routines did not behave correctly when the input matrix
was zero. Also improved the mat_lzz_pTest program."
 2018-10-24 15:10:23 +02:00
Timo Kaufmann e89b422114 Merge pull request #48921 from timokau/r8168 
r8168: init at 8.046.00
 2018-10-24 11:47:28 +02:00
Timo Kaufmann c8b5deae19 r8168: init at 8.046.00 2018-10-24 11:46:10 +02:00
Timo Kaufmann c4650da128 Merge pull request #48824 from timokau/cypari2-update 
pythonPackages.cypari2: 1.2.1 -> 1.3.1
 2018-10-22 15:08:53 +02:00
Timo Kaufmann 9512841e89 pythonPackages.cypari2: 1.2.1 -> 1.3.1 2018-10-22 14:52:19 +02:00
Timo Kaufmann db75fe7313 sage: fix doctest 
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
 2018-10-22 14:52:19 +02:00
Timo Kaufmann f6be714647 Merge pull request #48788 from timokau/sage-docbuild 
sage: fix docbuild
 2018-10-21 19:35:24 +02:00
Timo Kaufmann b39142cd1f sage: fix dochtml tests 2018-10-21 19:17:07 +02:00
Timo Kaufmann 965fa76908 Merge pull request #46288 from r-ryantm/auto-update/fluidsynth 
fluidsynth: 1.1.10 -> 1.1.11
 2018-10-21 16:48:52 +02:00
Timo Kaufmann 994826f651 Merge pull request #48774 from thefloweringash/mumble-hang 
mumble: fix hang on reconfiguring audio
 2018-10-21 16:29:16 +02:00
Timo Kaufmann 38c2be5ffe sage: fix docbuild 
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
 2018-10-21 14:16:06 +02:00
Timo Kaufmann c55cd16bc1 Merge pull request #48773 from timokau/spotify-update-script 
spotify: improve update script
 2018-10-21 13:03:09 +02:00
Timo Kaufmann 7a46812e37 spotify: improve update script 
More comments, better legibility, option to fetch from unstable
channels, nix-shell shebang.
 2018-10-21 12:47:54 +02:00
Timo Kaufmann 38c71c1163 Merge pull request #48394 from r-ryantm/auto-update/libvirt-glib 
libvirt-glib: 1.0.0 -> 2.0.0
 2018-10-20 23:26:54 +02:00
Timo Kaufmann a3971059e1 Merge pull request #47081 from r-ryantm/auto-update/elfutils 
elfutils: 0.173 -> 0.174
 2018-10-20 23:18:45 +02:00
Timo Kaufmann dd00db3c63 Merge pull request #46992 from r-ryantm/auto-update/ocamlbuild 
ocamlPackages.ocamlbuild: 0.12.0 -> 0.13.0
 2018-10-20 23:12:04 +02:00
Timo Kaufmann 2b5a353535 Merge pull request #46991 from r-ryantm/auto-update/openal-soft 
openal: 1.18.2 -> 1.19.0
 2018-10-20 23:09:51 +02:00
Timo Kaufmann 4fb56f1368 Merge pull request #48387 from r-ryantm/auto-update/ocaml4.06.1-ppxlib 
ocamlPackages.ppxlib: 0.3.0 -> 0.3.1
 2018-10-20 23:01:08 +02:00
Timo Kaufmann d75c5585cd Merge pull request #48755 from leenaars/thonny 
thonny: 3.0.0b3 -> 3.0.1
 2018-10-20 22:58:07 +02:00
Timo Kaufmann 0c7934017b Merge pull request #48741 from uvNikita/todolist/upgrade 
todolist: 0.8 -> 0.8.1
 2018-10-20 20:44:45 +02:00
Timo Kaufmann a413dedde1 Merge pull request #44527 from timokau/sage-8.4 
[WIP] sage: 8.3 -> 8.4
 2018-10-20 01:34:34 +02:00
Timo Kaufmann 7ca1c31dfa sage: 8.4.rc1 -> 8.4 2018-10-18 09:58:36 +02:00
Timo Kaufmann 192dde6411 Merge pull request #48314 from c0deaddict/master 
sonic-pi: 3.0.1 -> 3.1.0
 2018-10-17 00:02:01 +02:00
Timo Kaufmann d2b5518e1e Merge pull request #48507 from r-ryantm/auto-update/jmol 
jmol: 14.29.22 -> 14.29.26
 2018-10-16 10:36:39 +02:00
Timo Kaufmann 6aef372528 Merge pull request #48313 from Gerschtli/update/ts3 
teamspeak_server: 3.3.0 -> 3.4.0
 2018-10-13 16:28:16 +02:00
Timo Kaufmann f89df0b556 sage: 8.4.rc0 -> 8.4.rc1 2018-10-13 13:27:10 +02:00
Timo Kaufmann ef0c38422d Merge pull request #48261 from fgaz/termbox/init 
termbox: init at 1.1.2
 2018-10-12 18:45:16 +02:00
Timo Kaufmann 76f974f1bd Merge pull request #48235 from dtzWill/update/pcsctools-1.5.3 
pcsctools: 1.4.25 -> 1.5.3
 2018-10-12 18:41:54 +02:00
Timo Kaufmann a33dec8cd5 retdec: 3.0 -> 3.2 2018-10-11 23:53:00 +02:00
Timo Kaufmann 751903fa64 Merge pull request #48177 from worldofpeace/lollypop/0.9.604 
lollypop: 0.9.601 -> 0.9.604
 2018-10-11 14:14:03 +02:00
Timo Kaufmann 1aff3da14e Merge pull request #48020 from erictapen/47709-fix-regex 
buildRustPackage: fix regex for separating lib and bin
 2018-10-10 19:29:09 +02:00
Timo Kaufmann 9fcfcf529d Merge pull request #44077 from Moredread/slic3r-prusa3d/1.41.0 
slic3r-prusa3d: 1.40.1 -> 1.41.0
 2018-10-09 17:19:54 +02:00
Timo Kaufmann 8b61090fcc Merge pull request #48010 from joncojonathan/gramps-addToMaintainers 
gramps: add support for recommended packages, add joncojonathan to maintainers
 2018-10-09 17:14:51 +02:00
Timo Kaufmann f7736141cd Merge pull request #48067 from markuskowa/limesuite-up 
limesuite: 18.06.0->18.10.0
 2018-10-09 17:04:37 +02:00
Timo Kaufmann e62214150f Merge pull request #48069 from ryantrinkle/v4l2loopback-bump 
v4l2loopback: 0.11 -> 0.12
 2018-10-08 21:48:32 +02:00
Timo Kaufmann a88dad2684 Merge pull request #48039 from lheckemann/murmur-mention-mumble 
murmur: mention mumble in description
 2018-10-08 21:46:38 +02:00
Timo Kaufmann 9b90356044 Merge pull request #47979 from pacien/pkg-howl 
howl: init at 0.5.3
 2018-10-08 12:05:19 +02:00
Timo Kaufmann fc3120ce90 Merge pull request #48013 from schneefux/pkg/licenses 
Add licenses
 2018-10-07 22:33:37 +02:00
Timo Kaufmann 27919e06f1 sage: 8.4.beta7 -> 8.4.rc0 2018-10-07 12:23:10 +02:00
Timo Kaufmann 683c413118 Merge pull request #47984 from 8573/8573/fix/Bash/use-escapeShellArg/1 
nixos/bash: Use `escapeShellArg` for shell aliases
 2018-10-06 22:46:16 +02:00
Timo Kaufmann ec7d7e1f78 Merge pull request #47609 from mbode/heptio-ark_0_9_6 
heptio-ark: 0.9.4 -> 0.9.6
 2018-10-06 19:54:59 +02:00