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Author SHA1 Message Date
Ben Darwin 0dd910d470 python3Packages.graspy: init at 0.2 2020-04-10 00:08:42 -07:00
Ben Darwin 0473d4d62e python2Packages.traitsui: remove optional wxPython dependency 2020-04-09 10:04:04 -07:00
Ben Darwin e67d840931 python2Packages.apptools: 4.4.0 -> 4.5.0 2020-04-09 10:01:58 -07:00
Ben Darwin 92763dd8f1 python3Packages.nitime: quote homepage URL 2020-04-09 10:45:09 -04:00
Ben Darwin 7e2f26ea05 python3Packages.nilearn: quote homepage URL 2020-04-09 10:44:55 -04:00
Ben Darwin 8073255e47 python3Packages.nibabel: quote homepage URL 2020-04-09 10:44:40 -04:00
Ben Darwin e31f63b45a python3Packages.nipy: quote homepage URL 2020-04-09 10:43:53 -04:00
Ben Darwin 77901a96da ocamlPackages.sedlex: fix dependencies 2020-04-06 10:48:42 -04:00
Ben Darwin 2d50f3e27e python3Packages.spyder: unbreak package 
- by removed removed "Editor" category from categories arg to
  makeDesktopItem
 2020-04-01 17:16:05 -07:00
Ben Darwin 4aaa18b64b python3Packages.dcmstack: init at 0.8 2020-03-30 18:01:07 -07:00
Ben Darwin 17611f14c2 python3Packages.dipy: init at 1.1.1 2020-03-27 14:43:56 -07:00
Ben Darwin 6f9f91d331 python3Packages.cufflinks: add nose to checkInputs 2020-03-27 10:53:07 -07:00
Ben Darwin 93c9cb09bd python3Packages.deap: add nose to checkInputs 2020-03-27 10:53:07 -07:00
Ben Darwin ca2cf66f10 python3Packages.bayespy: add nose to checkInputs 2020-03-27 10:53:07 -07:00
Ben Darwin 78d5faba5e python3Packages.nilearn: add nose to checkInputs 2020-03-27 10:53:07 -07:00
Ben Darwin 5842ec9368 python3Packages.matplotlib: remove nose from propagatedBuildInputs 2020-03-27 10:53:07 -07:00
Ben Darwin 5df826fb11 python3Packages.rope: 0.14.0 -> 0.16.0 2020-03-26 13:43:10 -07:00
Ben Darwin 353c6c948e python37Packages.spyder: 4.0.1 -> 4.1.1 (and unbreak for Python3.7) 2020-03-23 10:50:45 -07:00
Ben Darwin ac17611354 python3Packages.python-language-server: 0.31.8 -> 0.31.9 2020-03-23 10:50:45 -07:00
Ben Darwin 3d0410e769 python38Packages.rope: disable for Python>=3.8 
- browsing the github page suggests the upcoming 0.17 release should support 3.8
 2020-03-23 08:40:29 -04:00
Ben Darwin 8e44423a96 ocamlPackages.lacaml: 11.0.3 -> 11.0.6 2020-03-18 08:32:39 +01:00
Ben Darwin 61b61ed087 python3Packages.batchgenerators: init at 0.19.7 2020-03-14 22:56:38 +01:00
Ben Darwin 45d0109512 python3Packages.threadpoolctl: init at 2.0.0 2020-03-14 22:56:38 +01:00
Ben Darwin b5d0ffcab1 python3Packages.hickle: 3.4.5 -> 3.4.6 2020-03-13 19:49:18 +00:00
Ben Darwin fd9b40d076 ocamlPackages_latest.phylogenetics: dune2/fix meta 2020-02-27 12:22:14 -05:00
Ben Darwin 290b09847a ocamlPackages.owl: 0.7.2 -> 0.8.0 2020-02-27 12:05:21 -05:00
Ben Darwin 5fc6b34dba ocamlPackages.eigen: 0.1.5 -> 0.2.0 2020-02-27 12:03:28 -05:00
Ben Darwin 65461ea1f2 python3Packages.nitime: init at 0.8.1 2020-02-26 13:19:28 -05:00
Ben Darwin 9a2cd20478 mrtrix: init at 3.0_RC3_latest 
This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.

Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
 2020-02-16 22:25:25 -05:00
Ben Darwin 6dca90784a python3Packages.pywick: init at 0.5.6 2020-02-14 16:42:52 -08:00
Ben Darwin 931f47304f python3Packages.hickle: init at 3.4.5 2020-02-14 16:42:52 -08:00
Ben Darwin 1112bcc75e c3d: unbreak via stdenv -> gcc8Stdenv 2020-02-13 17:45:18 -05:00
Ben Darwin c81a2e6a1e ocamlPackages.npy: init at unstable-2019-04-02 2020-02-11 07:33:42 +01:00
Ben Darwin c79d6d0430 c3d: 2018-10-04 -> unstable-2019-10-22; mark unbroken 2020-02-10 20:58:35 +01:00
Ben Darwin 7059f44440 python3Packages.tensorly: init at 0.4.5 2020-02-10 20:21:28 +01:00
Ben Darwin 35bfcc98c9 python3Packages.sparse: mark unbroken (package has been previously updated) 2020-02-10 20:21:28 +01:00
Ben Darwin 39f0e3b32b minc_tools: enable building conversion tools 2020-02-10 19:53:25 +01:00
Ben Darwin bcad453bcf minc_tools: 2017-09-11 -> unstable-2019-12-04 2020-02-10 19:53:25 +01:00
Ben Darwin 134b645343 python3Packages.nilearn: unbreak package 2020-02-06 19:59:14 +01:00
Ben Darwin f5c191739b pythonPackages.pydicom: 1.3.0 -> 1.4.1 
- routine update; unbreaks with Python 3.8 (not supported before 1.4.1)
 2020-02-06 19:59:14 +01:00
Ben Darwin 83bdc1d989 python3Packages.nibabel: 3.0.0 -> 3.0.1 
- this unbreaks the package due to erroring tests in 3.0.0
- remove obsolete (mostly Python2-related) deps
- add deps to support MINC, DICOM, and SPM formats
- only build on x64 due to a dtype bug on Arm64
 2020-02-06 19:59:14 +01:00
Ben Darwin d55c1b09ce ocamlPackages.bistro: propagate buildInputs 2020-02-06 09:39:25 +01:00
Ben Darwin 00cd1d0f21 ocamlPackages.parmap: init at 1.1 2020-02-04 17:49:45 +01:00
Ben Darwin 3ac3677876 octave: build without qscintilla by default 
- qscintilla is used for IDE features in the GUI, which is not built since qt support isn't enabled
- this removes qt from the Octave closure
 2020-02-03 10:29:17 -05:00
Ben Darwin 24bd88ce5a ocamlPackages.biocaml: 0.10.0 -> 0.10.1 2020-01-30 17:05:33 -05:00
Ben Darwin 29bc26113c ocamlPackages.cfstream: 1.3.0 -> 1.3.1 2020-01-30 17:04:54 -05:00
Ben Darwin 046730ebdb pythonPackages.pydicom: init at 1.3.0 2020-01-16 12:34:09 -08:00
Ben Darwin 54c409eb01 pythonPackages.pyezminc: remove 
- package supports Python 2 only
- develop-python3 branch exists but datatype tests fail
- not updated since 2018
 2020-01-16 12:14:49 -08:00
Ben Darwin 1dc14208f5 python3Packages.ignite: init at 0.2.1 2020-01-14 14:26:56 -05:00
Ben Darwin 1c613434c5 python3Packages.pynvml: init at 8.0.4 2020-01-14 14:26:50 -05:00
Ben Darwin 8f1994c2cc pythonPackages.pynrrd: init at 0.4.2 2020-01-14 10:33:55 -08:00
Ben Darwin ee7d45c638 pythonPackages.hydra: init at 1.4.1 2020-01-09 22:54:16 -08:00
Ben Darwin 60c03fb380 pythonPackages.omegaconf: init at 1.4.1 2020-01-09 22:54:16 -08:00
Ben Darwin b4615c3b6a python3Packages.pycm: init at 2.5 2020-01-08 16:19:47 -08:00
Ben Darwin 81179a4d56 pythonPackages.crc32c: init at 2.0 2020-01-07 20:55:18 -08:00
Ben Darwin d255365342 ocamlPackages.parany: 7.0.0 -> 8.0.0 2019-12-26 17:31:16 -05:00
Ben Darwin f1958523e3 ocamlPackages.cpu: setcore 1.0.1 -> cpu 2.0.0 2019-12-26 17:30:49 -05:00
Ben Darwin 80da0a626e functoria: 2.0.2 -> 3.0.3 2019-12-22 20:45:12 -05:00
Ben Darwin 2ea7b81750 netcdf: 4.6.1 -> 4.7.3 
and enable tests as per unmerged #56830
 2019-12-20 13:56:53 +01:00
Ben Darwin 52d15ab28b libminc: 2018-01-17 -> 2.4.03 and disable broken checkPhase on OSX 2019-12-09 14:19:15 -05:00
Ben Darwin bfe5d1cc96 ocamlPackages.owl: 0.7.1 -> 0.7.2 
- also enable tests (except on OSX) due to upstream fixes
 2019-12-09 11:00:11 -05:00
Ben Darwin e85fe01325 plplot: init at 5.15.0 2019-12-06 14:41:39 -05:00
Ben Darwin f3f6aa4475 metrics-unix: fix gnuplot input 2019-12-06 12:14:38 -05:00
Ben Darwin 3fa5a19cf8 ocamlPackages_latest.phylogenetics: init at unstable-2019-11-15 2019-12-06 12:00:44 -05:00
Ben Darwin 13f55534cb owl-base: remove unused input 2019-12-06 12:00:44 -05:00
Ben Darwin 6ac6e7ac0b owl: propagate eigen 2019-12-06 12:00:44 -05:00
Ben Darwin b103ec0911 ocamlPackages.gnuplot: init at 0.5.3 2019-12-06 12:00:44 -05:00
Ben Darwin eddfe95f29 ocamlPackages.biocaml: init at 0.10.0 2019-12-06 12:00:44 -05:00
Ben Darwin 6b8de994a1 ocamlPackages.cfstream: init at 1.3.0 2019-12-06 12:00:44 -05:00
Ben Darwin d016a507ea ocamlPackages.{owl-base,owl}: init at 0.7.1 2019-11-29 17:22:45 +00:00
Ben Darwin 777efe8425 ocamlPackages.eigen: init at 0.1.4 2019-11-29 17:22:45 +00:00
Ben Darwin 06ddb4a49f ocamlPackages.parany: init at 7.0.0 2019-11-29 11:12:08 -05:00
Ben Darwin eb1efb718c ocamlPackages.setcore: init at 1.0.1 2019-11-29 11:12:02 -05:00
Ben Darwin e3e3bd61f8 pythonPackages.gpyopt: provide setuptools at runtime, needed by the package 2019-11-18 20:08:13 -08:00
Ben Darwin b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
Ben Darwin 634effcea4 gpyopt: init at unstable-2019-09-25 2019-11-15 16:24:11 -05:00
Ben Darwin 736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Ben Darwin 8d7fef4912 pythonPackages.pyezminc: mark as unbroken 2019-10-26 09:55:30 -07:00
Ben Darwin ddc2955ad9 EZminc: 2017-08-29 -> 2019-07-25; mark unbroken 2019-10-26 09:55:30 -07:00
Ben Darwin cb6d819b93 niftyseg: init at 1.0.0 2018-11-16 12:29:29 -05:00
Ben Darwin 6aa3deeb50 niftyreg: init at 1.3.9 2018-11-16 12:24:53 -05:00
Ben Darwin 0adc6f4d8f mirtk: init at 2.0.0 2018-08-13 15:55:04 -04:00
Ben Darwin de897bacea celf: init at 2013-07-25 (#41141) 2018-05-28 21:27:53 +02:00
Ben Darwin a6a38c7118 python2Packages.pyezminc: init at 1.2.01 2018-05-26 12:51:10 -04:00
Ben Darwin 1e50e178ae simpleitk: init at 1.1.0 (note this only builds the C++ libs, not the Python/Lua/... bindings) (#27451) 
* conglomerate: init at 2017-09-10

* simpleitk: init at 1.1.0 (note this only builds the C++ libs, not the Python/Lua/... bindings)
 2018-05-09 15:50:01 -05:00
Ben Darwin 6266387bfa libminc: 2017-09-14 -> 2018-01-17 2018-05-09 16:25:22 -04:00
Ben Darwin 7a64b0726a bicgl: init at 2017-09-10 2018-05-09 14:05:29 -04:00
Ben Darwin a9492eb70f Merge branch 'master' of github.com:NixOS/nixpkgs 2018-05-09 13:37:33 -04:00
Ben Darwin fa850e8fda conglomerate: init at 2017-09-10 2018-04-27 18:57:17 -04:00
Ben Darwin 837e8c342c conglomerate: init at 2017-09-10 2018-04-27 18:52:56 -04:00
Ben Darwin 6908f0ce89 c3d: updated rev still won't compile; mark broken 2018-04-10 13:40:53 -04:00
Ben Darwin 1575136ff2 Merge branch 'minc_ecosystem' of github.com:bcdarwin/nixpkgs into minc_ecosystem 2018-04-10 13:35:39 -04:00
Ben Darwin efb02d3c00 elastix: 4.8 -> 4.9.0 2018-04-10 13:34:29 -04:00
Ben Darwin 1595f3cc45 delete broken alias 2018-04-09 20:29:29 -04:00
Ben Darwin 524b606f16 disable a second libminc test 2018-04-09 20:29:03 -04:00
Ben Darwin c1488921a0 oobicpl: init at 2016-03-02 2018-04-09 18:07:52 -04:00
Ben Darwin 6972e366be arguments: init at 2015-11-30 2018-04-09 18:07:52 -04:00
Ben Darwin de2f36982b ezminc: init at 2017-08-29 2018-04-09 18:07:15 -04:00
Ben Darwin c9db4cabc8 bicpl: init at 2017-09-10 2018-04-09 18:07:15 -04:00
Ben Darwin c14342d44f itk: enable more MINC support 2018-04-09 18:06:54 -04:00